Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03288 ATGGGGAAAAGAGGGAATGTGTTGATGCAGAAGTATGAAATTGGGAAACTATTAGGGCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAAGACTGGGGAGAGTGTAGCCGTTAAGGTGATTGAAAAGGAGAAAATTTTAAAAATTGGGTTGGTGGATCAAATAAAGCGAGAGATATCTATCATGAAACGGATTAAACACCCCAATGTTTTGCAATTGTATGAGGTCTTGGCCACCAAGACCAAGATTTACTTCATCATGGAATATGCCAAAGGGGGCGAACTTTTTAACAGGGTGGCTAAAGGTAGATTCAGTGAGGCTAGGACAAGGAAGTACTTTCAACAATTGGTCAGTGCAGTTGATTTTTGCCATAGCAAGGGCGTTTATCACAGGGATTTGAAGCCAGAGAACTTGCTTTTGGATGAGAATGGTGTTTTGAAGGTAGCGGATTTTGGGTTGAGTGCATTTGTTGAATCGCATCGTCAAGACAACATGTTGCATACAGTTTGTGGAACTCCTGCATATGTGGCGCCTGAGGTTGTAAGTAGAAAGGGCTATGATGGAGCAAAATCTGATGTATGGTCTTGTGGAGTGATCTTATTTGTTCTTTTGTCTGGTCATTTGCCATTCTATGATTTGAATCTCATGTCACTGTATAGGAAAATAGGCAGGGCGGAATACAAATGTCCAAACTGGTTTTCAATTGAAGTGCGCAGATTGTTAGGGAAAATCCTTGACCCCAACCCAGATACCAGGATATCCATGGCAAAAGTTATGGAAAATTCCTGGTTCAGAGGATTCAAACCCAAGTCCGGTGAAGAGAAAAGACAGTCTGCAAATATGGATTTAGTTAATTCTGATCAAGTTTTCGGTTTGTGCGAGAATACAAGCACTGCTTCTGTTGAGGCAGTTCAAGAATTGGTTGCACCTGCACATTTAAATGCTTTTGACATAATTTCTCTGTCTTCAGGGCTAGACTTGTCTGGCCTATTTGCTAACATCGGTGAACAGGAAGATATCAAATTTACGTTCATGAGCTCTTCCTCATCTATCATGTCTACAGTGGAAGATATTGCTCGCATTTTGAGGATGCTCATCATTAAGAAGGATGGAGGGTTGCTGAAATTGGAGAGATCCGAGGCTGGTAGAAAAGAATCGCTTTCCATTGATGTTGAAATATTTGAAGTCGCTCCATCTTTCCATTTGATTGAGATGAAATCCGGCGGTGATACATTAGAATTCCAGAAGATATTGAAGGAAGATTTAAGACCAGCTCTCAAAGATATTGTTGGTGTTTGGCAAGACGAGCATTACTTGCAGTAA 1329 0.4101 MGKRGNVLMQKYEIGKLLGQGNFAKVYHARDLKTGESVAVKVIEKEKILKIGLVDQIKREISIMKRIKHPNVLQLYEVLATKTKIYFIMEYAKGGELFNRVAKGRFSEARTRKYFQQLVSAVDFCHSKGVYHRDLKPENLLLDENGVLKVADFGLSAFVESHRQDNMLHTVCGTPAYVAPEVVSRKGYDGAKSDVWSCGVILFVLLSGHLPFYDLNLMSLYRKIGRAEYKCPNWFSIEVRRLLGKILDPNPDTRISMAKVMENSWFRGFKPKSGEEKRQSANMDLVNSDQVFGLCENTSTASVEAVQELVAPAHLNAFDIISLSSGLDLSGLFANIGEQEDIKFTFMSSSSSIMSTVEDIARILRMLIIKKDGGLLKLERSEAGRKESLSIDVEIFEVAPSFHLIEMKSGGDTLEFQKILKEDLRPALKDIVGVWQDEHYLQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03288 442 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03288 442 Pfam NAF domain 312 368 IPR004041 GO:0007165
Viun1g03288 442 Gene3D Transferase(Phosphotransferase) domain 1 92 296 - -
Viun1g03288 442 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Viun1g03288 442 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Viun1g03288 442 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03288 442 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Viun1g03288 442 CDD CIPK_C 316 429 - -
Viun1g03288 442 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 429 - -
Viun1g03288 442 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03288 442 FunFam Non-specific serine/threonine protein kinase 310 435 - -
Viun1g03288 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Viun1g03288 442 Gene3D Kinase associated domain 1, KA1 310 435 - -
Viun1g03288 442 SUPERFAMILY Protein kinase-like (PK-like) 8 285 IPR011009 -
Viun1g03288 442 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Viun1g03288 442 FunFam Non-specific serine/threonine protein kinase 6 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03288 Viun-Chr1 40507783 40509975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03288 1 438 CBL-interacting serine-threonine protein kinases AT5G58380 56.098 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun1g03288 Pkinase 1.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03288 K07198 - gmx:100801834 701.434