Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03284 ATGGAAGACGGCAAGAGTATGGGTCGAAAGGAGAAGAGGAAGGCAATGAAGAAAATGAAGCGGAAGCAGACAAGGCAGGAGGCGGCGGAGAGGGAGCGACGGGAGGAGGAGGGCCGCCTCAACGATCCGGAGGAGCAGAGGCGGATGCAATTGCTGGAGCAGGAGGAGGCGGAGAGAATGCAGAGGGACATCATCCTCTTTCAGGAGAGGGAGAAGGCTTTCATGGATATGATAATCACTCGACAGCAACAGCAACAGCAGCAGCAGCAAGAACAAGAGCAAGAGCAGAACATCGACCACGACCATGAATTTGAATACGTGGTTCAGGAAGAAGGCCCTCCGGAGATTATTTGGCAAGGAAACGAGATCATCTTCAAAAAGAAACAGGTCAGAGTTAGGGTTCCGGACAACAACAACGACAACCACAATAACCATTCGCAGCAGAATGACGACATTAGACCTACGTCCAATCCCTTACCCCCGGAATCGGAATCGGAATCGCGCACTCAGAACCTCCAGGACATTGCTCAACAAATACCCAATTTCGGAACTGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACGGGAGCGTGCCGCTTTGGTAGGCGCTGTAGCAGAGTCCATTTTATCCCTGATAAATCACCCACTCTTCTTATCGAAAACATGTACAACGGTCCTGGCCTTGCATGCGATCGGGACCAAGACGAGGGCCTCGAGTATACAGATGAAGAGATTGATCGCTGCTTTGAAGAATTTTATGAGGATGTCCACACAGAATTCTTGAAGTTTGGGGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTGTATGTACAGTACAAAGCTTTGGATTCTGCTCTGCTCGCAGCAAACTCAATGAAACGTCATGACTTTGCCGGAAAACGGGTAACTTGTCAATTTGTTAACTTGACAAGATGGAAGGTTGCCATATGTGGAGAGTATATGAAATCGGGTTTCAAGACGTGTTCTCACGGAACAGCATGCAATTTTATTCACTGTTTTCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCTCCCCCAAAATTTTGGGTAGAAAAGATGATCGCTTTATTTGGTTATTCTGATGATTACGAGACTTCAAGGGAGCAGGGAAATTTTAGTTTGTCAAAAACAGATTCTGACAGGTACCACTGTAGAAGGTCAAGATCCAGAGAGATGGATCAGATAAGTTGTGGTCATTCTGGTAAAAGAAAACATGAAGATGAAAGAAAGCAAAGAACTCCCTATGAGGATCGGAATGCTAGCTTAAAAAACACTCATAAAAGAAAATCCAGAGGCAGAACTCCAGATACTGATTCTGACAGAGAATTAGACAAGGAGGAAATTAGGGAAAGACGCCATGAATACCCTAGGAATGGCTCATTTAACAAGAACAGGGATGAAAATAGCAGAAGCCATGAAGAGGATTCTGATGTGGATTGTGATACTAGGGACAATGAAAAACAGCATGGAAGAAACCCAAGAAAGTGCGATAAAGACACCAGGGTCTGGATTAATGAGGCTGCTGGTTTGGATGGGGACAGAGATGTGAGAAGGCACCGTATTAGGGAAAGCTCAGGACATCAGAGTGGTGATGCTTCTGAATCCGACAAAGATTTGTTTGGTAGAGTGGAGATGGAAACACAACATGATTACTCTAGGAAAAGCTCCAGACACAGAAGATCGGGTGTTCAGGTATCTATAAAAAGAAGAGATCAAAATGACAAAGTTGATAGAGATGGGTCCCGGAAGGACAGTTACAAACGAGATCATCACAAAAAGAAGTGA 1848 0.4481 MEDGKSMGRKEKRKAMKKMKRKQTRQEAAERERREEEGRLNDPEEQRRMQLLEQEEAERMQRDIILFQEREKAFMDMIITRQQQQQQQQQEQEQEQNIDHDHEFEYVVQEEGPPEIIWQGNEIIFKKKQVRVRVPDNNNDNHNNHSQQNDDIRPTSNPLPPESESESRTQNLQDIAQQIPNFGTEQDKAHCPFHLKTGACRFGRRCSRVHFIPDKSPTLLIENMYNGPGLACDRDQDEGLEYTDEEIDRCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKALDSALLAANSMKRHDFAGKRVTCQFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVEKMIALFGYSDDYETSREQGNFSLSKTDSDRYHCRRSRSREMDQISCGHSGKRKHEDERKQRTPYEDRNASLKNTHKRKSRGRTPDTDSDRELDKEEIRERRHEYPRNGSFNKNRDENSRSHEEDSDVDCDTRDNEKQHGRNPRKCDKDTRVWINEAAGLDGDRDVRRHRIRESSGHQSGDASESDKDLFGRVEMETQHDYSRKSSRHRRSGVQVSIKRRDQNDKVDRDGSRKDSYKRDHHKKK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03284 615 Coils Coil 12 39 - -
Viun1g03284 615 ProSiteProfiles Zinc finger C3H1-type profile. 321 351 IPR000571 GO:0046872
Viun1g03284 615 MobiDBLite consensus disorder prediction 134 170 - -
Viun1g03284 615 MobiDBLite consensus disorder prediction 404 517 - -
Viun1g03284 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 319 IPR000504 GO:0003723
Viun1g03284 615 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Viun1g03284 615 FunFam Zinc finger CCCH domain-containing protein 5 218 317 - -
Viun1g03284 615 SMART c3hfinal6 321 350 IPR000571 GO:0046872
Viun1g03284 615 SMART c3hfinal6 186 212 IPR000571 GO:0046872
Viun1g03284 615 MobiDBLite consensus disorder prediction 586 607 - -
Viun1g03284 615 Gene3D - 216 317 IPR012677 -
Viun1g03284 615 MobiDBLite consensus disorder prediction 404 444 - -
Viun1g03284 615 MobiDBLite consensus disorder prediction 452 517 - -
Viun1g03284 615 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 349 IPR000571 GO:0046872
Viun1g03284 615 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 190 210 IPR000571 GO:0046872
Viun1g03284 615 SUPERFAMILY RNA-binding domain, RBD 251 319 IPR035979 GO:0003676
Viun1g03284 615 MobiDBLite consensus disorder prediction 22 55 - -
Viun1g03284 615 MobiDBLite consensus disorder prediction 536 615 - -
Viun1g03284 615 PRINTS U2 auxiliary factor small subunit signature 276 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Viun1g03284 615 PRINTS U2 auxiliary factor small subunit signature 303 327 IPR009145 GO:0000398|GO:0003723|GO:0089701
Viun1g03284 615 PRINTS U2 auxiliary factor small subunit signature 341 353 IPR009145 GO:0000398|GO:0003723|GO:0089701
Viun1g03284 615 PRINTS U2 auxiliary factor small subunit signature 191 210 IPR009145 GO:0000398|GO:0003723|GO:0089701
Viun1g03284 615 PRINTS U2 auxiliary factor small subunit signature 248 263 IPR009145 GO:0000398|GO:0003723|GO:0089701
Viun1g03284 615 PRINTS U2 auxiliary factor small subunit signature 210 230 IPR009145 GO:0000398|GO:0003723|GO:0089701
Viun1g03284 615 MobiDBLite consensus disorder prediction 1 55 - -
Viun1g03284 615 MobiDBLite consensus disorder prediction 536 574 - -
Viun1g03284 615 MobiDBLite consensus disorder prediction 136 170 - -
Viun1g03284 615 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Viun1g03284 615 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 180 508 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun1g03284 zf-CCCH 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03284 K24273 - gmx:100789091 788.489