Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03281 ATGGTTTCTAAAGAGCAAAAGAGAGCATCACTGCATGAGAAGCTGCAACTTCTTCGTTCTGTCACTAACTCTCATGCACTAAAGAAAACCTCGATCATAATAGATGCGTCAAAGTATATCCAGGAGTTAAAGCAAAAGGTGGAAGAATTGAATCAAGACTTAGCCAATGCACAAACTTCAACTGACCAAAATACTTTGCCTATGGTGACGGTAGAAACCACGGAGAAGGGTTTTGTTATTAATGTTTTTTCAGCAAAGAGTTGCCCTGGTCTGTTTGTTTCCATATTGGAGTCATTTGAAGAGATGAGTCTTAATGTGGTTGAAGCTAGGGCTACTTGCACAGACACGTTTCTGTTTCATGCTGTTGGAGGAAAAAATGAAGAACAAGGTAAGAATATTGATGCACGAGCTGTGAAACAGGCAATGGGACAAGCGATAAAGAATTGGAGCCAAAATGCTGACCAAAAGTAA 471 0.3992 MVSKEQKRASLHEKLQLLRSVTNSHALKKTSIIIDASKYIQELKQKVEELNQDLANAQTSTDQNTLPMVTVETTEKGFVINVFSAKSCPGLFVSILESFEEMSLNVVEARATCTDTFLFHAVGGKNEEQGKNIDARAVKQAMGQAIKNWSQNADQK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03281 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 151 - -
Viun1g03281 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 65 IPR036638 GO:0046983
Viun1g03281 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03281 Viun-Chr1 40460431 40461883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03281 1 133 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 26.829 7.59e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03281 - - gmx:100813030 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03281 1 40460431 40461883 Viun8g02408 8 33858429 33860124 ECH
Viun5g01210 5 8624370 8625996 Viun1g03281 1 40460431 40461883 ECH
Viun6g01242 6 21647873 21649704 Viun1g03281 1 40460431 40461883 ECH
Viun1g03281 1 40460431 40461883 Viun1g03281 1 40460431 40461883 ECH
Viun1g03281 1 40460431 40461883 Viun8g02408 8 33858429 33860124 PCT