Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03268 ATGGTAGCGGAGAAAGCCAACCTTAACTCTTGTCAGTTTTCACAACAAGTAGGTAATGCAGACCAAGTCTCTGACAAGAAGAAAGAAAGATGGAAGAAGACTCCGTCCACGGCGCACAACAACCCATGTTATTTTTTGTTTCTCCTCTGGGTGTGGACTCTTGTTCTCTCCACATGTTTGAATTCGGTTTTGTGCGAAGATGAGGGTTGGGATGGAGTGGTCGTGACGGCGTCAAACTTCTTAGCACTTCAAGCGTTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCTTGCGGAGCTGGAATGATAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCCAAGGGAGAGGTTATTGTAATCCAGCTTCCGTGGAAGGGATTGAGAGGGCGTATCACTGATAAAATTGGGCAGCTTCAAGGTCTTAGGAAGCTCAGTCTTCATGATAATCAAATTGGTGGTTCAATCCCTTCCACTTTTGGACTTCTTCCTAACCTTAGAGGGGTTCAGTTATTCAACAATAGGCTCACAGGTTCCATCCCTTCTTCTTTAGGTTACTGTCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGAAGCAATCCCTTATAGTCTTGCCAATTCCACCAAACTTTATTGGCTTAACTTGAGTTTTAACTCCTTCTCTGGTCCTTTACCGGCTAGCTTAACTCACTCACTTTCCCTCACATTCCTTTCTCTTCAACATAATAATCTATCCGGTCCCCTTCCTAACTCTTGGGGTGGGAATTCTAAGAATGACGAGTTCTTTAGGCTTCGAAGTTTGCTCCTAGATCATAACTTTTTCACTGGAAACGTTCCTTCTTCTTTGGGTGGCTTAAGAGAACTCAATGAAATTTCCCTTAGTAACAATAGGTTTAGTGGAGCTATACCGAATGAAATAGGAACTCTTTCTAGACTCAGGACACTAGACATTTCTAATAATGCATTGAATGGGAGCTTGCCTGCTACCCTCTCTAATTTATCCTCGCTTACACTGCTCAATGTTGAGAATAACCTCCTTGAAAATCAAATTCCTGGAACTTTAGGGAGTTTGCACAATCTTTCTGTTCTGATTTTGAGCAGAAACCAATTTAGTGGCCATATTCCTTCGAGTATTGCAAACATTTCCACTCTTAAGCAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGTCTCCTTTAACAGTCAACGTAGTCTTGATCTCTTCAATGTTTCTTACAATAGCCTCTCAGGTTCTGTACCCTCTCAACTTGCCAGGAAATTCAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCCTCAACACCATGTCCTTCACAAGCTCCATCAGAAGGAGTCATTGCCCCACCTCATGAAATGTCAAAACACCAACATCGTAGGAAGCTAAGAACCAAAGACATTATTCTCATAGTAGCAGGAGTTCTTCTCATAGTCCTAATCATACTTTGTTGCATCCTTCTCTTCTGTCTGATCAGAAAGAGATCAGCTTCGAAGACCGAGAATGGCAGAGGTGTAGGGAGAACTGGAACTACGAGGGCAGAAAAAGGAATCCCTCCTGTTGCTGCTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCAATAGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATAATGGGAAAGAGCACCTATGGAACTGTGTATAAGGCTATATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATCGCTAGAGGTCAGAGAGAATTTGAATCAGAAGTCAGTGTTCTGGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGGGCCTATTACTTGGGACCCAAAGGGGAGAAGCTTCTGGTTTTTGATTACATGCCCAAAGGAAGTGTTGCTTCTTTCCTACACGGTAGTGGAACTGAAACATCCATTGATTGGCAAACAAGGATGAAAATAGCACAGGGCATGGCTCGTGGCTTGTTGTACCTCCATTCCCAGGAGAACATTATACATGGAAACCTCACATCCAGCAATGTATTGCTTGATGAGAATACAAATGCTAAAATTGCAGATTTTGGTCTTTCTAGGCTGATGACAACTGCTGCTAATTCCAACGTGATAGCTACTGCTGGAGCATTGGGATACCGGGCACCTGAGCTCTCGAAGCTCAAGAAAGCCAACTCCAAAAGTGATATCTATAGCCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAGTCACCTGGGGTGTCTATGAATGGAGTAGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGCTGACTTAATGAGAGACTCTTCAACAGTTGGCGATGAGTTGCTAAACACATTGAAACTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTGCTGCACCAGCTGGAAGAGATTAGACCAGAGAGATCAGTCACAGCCAGTCCTGGGGATGATTCTATAATATAG 2580 0.4368 MVAEKANLNSCQFSQQVGNADQVSDKKKERWKKTPSTAHNNPCYFLFLLWVWTLVLSTCLNSVLCEDEGWDGVVVTASNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGEVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTFGLLPNLRGVQLFNNRLTGSIPSSLGYCPLLQSLDLSNNLLTEAIPYSLANSTKLYWLNLSFNSFSGPLPASLTHSLSLTFLSLQHNNLSGPLPNSWGGNSKNDEFFRLRSLLLDHNFFTGNVPSSLGGLRELNEISLSNNRFSGAIPNEIGTLSRLRTLDISNNALNGSLPATLSNLSSLTLLNVENNLLENQIPGTLGSLHNLSVLILSRNQFSGHIPSSIANISTLKQLDLSLNNLSGEIPVSFNSQRSLDLFNVSYNSLSGSVPSQLARKFNSSSFVGNIQLCGYSPSTPCPSQAPSEGVIAPPHEMSKHQHRRKLRTKDIILIVAGVLLIVLIILCCILLFCLIRKRSASKTENGRGVGRTGTTRAEKGIPPVAAGDVEAGGEAGGKLVHFDGPIAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKIARGQREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMPKGSVASFLHGSGTETSIDWQTRMKIAQGMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANSKSDIYSLGVILLELLTRKSPGVSMNGVDLPQWVASIVKEEWTNEVFDADLMRDSSTVGDELLNTLKLALHCVDPSPSARPEVHQVLHQLEEIRPERSVTASPGDDSII 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03268 859 Gene3D Ribonuclease Inhibitor 236 333 IPR032675 -
Viun1g03268 859 Gene3D Ribonuclease Inhibitor 78 235 IPR032675 -
Viun1g03268 859 SMART LRR_typ_2 143 166 IPR003591 -
Viun1g03268 859 SMART LRR_typ_2 365 388 IPR003591 -
Viun1g03268 859 SMART LRR_typ_2 341 364 IPR003591 -
Viun1g03268 859 SMART LRR_typ_2 192 214 IPR003591 -
Viun1g03268 859 SMART LRR_typ_2 317 340 IPR003591 -
Viun1g03268 859 SMART LRR_typ_2 167 191 IPR003591 -
Viun1g03268 859 Gene3D Phosphorylase Kinase; domain 1 578 649 - -
Viun1g03268 859 PRINTS Leucine-rich repeat signature 317 330 - -
Viun1g03268 859 PRINTS Leucine-rich repeat signature 194 207 - -
Viun1g03268 859 SUPERFAMILY Protein kinase-like (PK-like) 576 845 IPR011009 -
Viun1g03268 859 CDD STKc_IRAK 578 843 - -
Viun1g03268 859 SUPERFAMILY L domain-like 117 454 - -
Viun1g03268 859 Gene3D Transferase(Phosphotransferase) domain 1 650 856 - -
Viun1g03268 859 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 264 462 - -
Viun1g03268 859 FunFam Leucine-rich repeat receptor-like protein kinase 557 648 - -
Viun1g03268 859 Pfam Leucine rich repeat N-terminal domain 81 117 IPR013210 -
Viun1g03268 859 ProSiteProfiles Protein kinase domain profile. 572 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03268 859 Pfam Protein tyrosine and serine/threonine kinase 575 840 IPR001245 GO:0004672|GO:0006468
Viun1g03268 859 Gene3D Ribonuclease Inhibitor 334 460 IPR032675 -
Viun1g03268 859 Pfam Leucine rich repeat 145 204 IPR001611 GO:0005515
Viun1g03268 859 Pfam Leucine rich repeat 271 330 IPR001611 GO:0005515
Viun1g03268 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 270 843 - -
Viun1g03268 859 FunFam Pollen receptor-like kinase 1 649 853 - -
Viun1g03268 859 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 76 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03268 Viun-Chr1 40385070 40389124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03268 70 845 Receptor kinase-like Gene Family AT3G51740 63.158 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun1g03268 PK_Tyr_Ser-Thr 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03268 - - pvu:PHAVU_001G246800g 1474.91