Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03265 ATGCAGAAAAGAAGACATTCACGGCAATCAAAGAATCCATTCCACGCTTATGCATTCGAGACACTTCTGTCTGGTTCATGGCAAGCTGTAGAGCTCATAAAAATTGAGGCAGGAATTACGAGTCTGCAATCCATAGATAATCACCATAGGACCATAGAGGAGGGCCCTTTTTCAGAGCTTAGAATAAGATCACGAAAAGCCACTTTATCAGATTGCTCAGAATTTTTAAGAGGTGGGATTGACATTTGTGTTCTCTCAGCATCTCAGCAGAGTGGTGATACTAACTCAGATGGATTTTCTGATAACAAGGTGTGGGTTGATGCTAAAATAAATTCTATACAGAGAAAACCCCATAGTTCAGGATGCTCGTGTCTGTATTATGTAAACTTGTATGTTAATCAAGGTTCACTTGGTAGGAAGATAAGAACTCTTAGTAAAGAGGTTAAGGTAATCGGAATAAATGAGATTGCCATCCTCCAGAAGCTTGATCGTAGTGTTTGTGAAGATCAACACTATCGATGGGAATTATCCGAAGATTGCTCCAATCTGTCGCATACTAAATTGATCAATGGAAAATTTTTATCTGATCTTTCATGGTTAGTTGTTATATCTTCTTTAAAGAAGGTTTCATTTTGTGTAAGATCTGTGCAAAACAAGATTGTGTATCAAATTTTAGATAGGGATGTTGGCAGCTCTTCATTAAACATGAAACCTCGGATAAGTGTTTTTAATTTTGAGGTGAGTCACGATGGCACGTTAAAGCCCATTGTTACTCAAGTTGATGCATCTGACACTGATGCAAATGGCCATGCAGATGATTCCCGTGATGATGTTCAGGGCTTAAGACGATCGGGACGTAGGAACATACCACCTGAACGGTACTTTAGTTGTGATAATGTTTCTGAAATAAAGGTTGGCGATGTTCGAACCTGGCCATACAAGACCAAGAAAGGGAAGGAAGATGGTGATGACATGTGTTCTAGCAGAGAGATTAAAGTATACTGCAGGAGGAATAGAAAAAATGAAATAAAGTCTGGTGAGGACGGTCAAAATGAACATCAAACTCAACTTGCTAGTGTTTCTCTTCTTGAAGAAGGAGATTCATTAGTCCCTGAGCATCATGCCCTCAATGACAACGTTACTAGAGGTAATGCAAATTACAGCAACACTGAGCGTAAGAGGAAGAGACCTTTAGATCTGAAAGGTGATGAAGGTTGTGATCCTGGATGTGGAGACTTGAATTCAAATTTAAACTTCAACAGAAGAAATGATAGAAGTTTAAATGCATCTGCCTACGAGGAAATGATTGATTCTTACTTCAAGGATATTTATAGAACTCCAACAAAAGAAGAACCAACTGTAATGGAAGTGTGGAACGAAATCAACAGATCGGAGAAAAAGAAGGAAGCAGAAACGCCTCAAACAGAGGAAGATGAACAAATCTCTGAGATAGATATGCTGTGGAGAGAGATGGAGATGGCAATGGCATCATATCATATTGAAGAAGATTCAAATGCTGCCAATTTTGTTGAGAATTCCGAAGAACCTAATCATACTTGTCCACATGACTACAGATTGAATGAACAAATTGGAATTTGTTGTTTCAAATGTGGCTCTGTGAAAACTGAGATAAAGTACGTGACGCCACCCTTTCTAGAAAAGCATTACCGAGCGAGGCACCAAGAGGAGAGGCAATGCAGTGGAGAAGAGGGTGATAAAGATGATGTTTTCCATCAGTTATCAACTCGTGATGAACTTACTTCTATGGAACATGACAACGTCTGGAAGTTGATCCCTGAACTTAGAGAAAAGATGCATGTCCACCAAAAGAAAGCTTTCGAATTTCTTTGGCAAAATATTGGTGGGTCTACGGATCCAACACTAATGGATGCAGAATCCGAAAGAAGAGGGGGTTGTATCATATCTCATTCTCCTGGATCTGGTAAAACTTTTCTCATCATTGCATTTCTCATTAGCTATTCAAAGCTATTTCCGGGGATGAAGCCTCTTGTCCTTGCTCCAACAACCACTCTTCACACTTGGCACAAAGAATTCATCAAATGGGATATTTCTATGCCAGTGTATCTGATTCATGGAAGCCGTAGACCTCAGAGAGACGATATGCAAAATTCAATTGCCCTTCCTCCTTTTCTACATCCAAATAGAGATGTCAAGCATATTTTGAACTGCTTGGACAAAATAAAAAAGTGGCAAGCAAACCCAGGTGTTCTGATCATGAGTTATGCCTCTTTTTTAGCATTGATGAGAGAGGGTTCAGGGTTTACACCCAGAAAGTATTTGGCTAAAGCATTGAGGGAAAGTCCTGGGATCCTGATACTTGATGAAGGTCACAATCCTAGAAGCACTAAATCAAAGTTGAGGAAAGTGTTGATGAAAGTGCAAACAGATATAAGAATTCTACTTTCTGGTACGTTATTTCAGAATAACTTCTGTGAATACTTTAACACACTTTGCTTGGCAAGACCAAAGTTTATATACGAAGTGCTGAAAGAGTTAGACCCAAACGACAGAAGGAAAAGAAAAAGGGCAGAGAAGGAACGCCATTTGCTGGAGTCACAAGCTAGAAAATTGTTCTTAGACAACATTGCTGGGAAAGTTGATTCAAGTGACGAACATGAGAGAATGCAAGGTCTAACCATGTTGAAGAAAATTACAAGCGGTTTCGTAGATATTTATGAGAGCACAAGTTTTGACAGTGTTCCTGGCTTGCAAATGTATACGTTGCTGATGAACACAGGTGGCATGCAGAGTGAAATTTTGGAGAAACTGCACAGGAAAATGGCTGATTGCGCGGGATTCCCTCTGGAGTTAGAGCTTTTGATAATCCTCGGATCAATACATCCATGGTTGGTTAAAACAGCCTCGTATGCAGAGAAGTTTATCCCTCTGGAGCAGCTGCAGCAGCTGGAGAAATGCAGGTATGATTTGAAAGTAGGGTCAAAAGTTAAATTTGTTATGAGTCTCGTTCTCCGTGTTATGGAGAAGGAGAAAGTACTTATATTCTGCCACAATCATGCACCTGTGAAGTTATTGGTAGAGTTATTTGAGGTGGTGTTGAAATGGCAGAAAGGTAGAGAAATTCTGTTGCTCAATGGGGAACAAGAACTGTTTGAACGTGGGAAAGTGATAGATAAGTTTGAAGAAGCGAAAGGACCATCGAAGGTGCTCCTTGCTTCCATTACAGCTTGTGCAGAAGGTATTAGTTTGACAGCAGCTTCGAGAGTGATTTTTCTGGACTCAGAGTGGAATCCATCGAAGACAAAGCAAGCTATTGCAAGGGCCTTTCGTCCTGGTCAGAAAAAGATGGTTTATGTGTATCAGCTTTTGGCAACAGGCACATTAGAGGAAGATAAGTACAAAAGAACGACTTGGAAAGAGTGGCTTTCCAGCATGATTTTCAGTGAGGCCTTCCATGAGAACACCTCACACTCCCAAGTAGAGATGATTGAAGATGACATACTCAGGGAAATAGTTGAAGAAGACAAGTCCAAATCAATTCACATGATACTCAAGAATCATAAAGCTTCCACAAACTCAACCGAGCTAAATAGGTCAATATAA 3582 0.4001 MQKRRHSRQSKNPFHAYAFETLLSGSWQAVELIKIEAGITSLQSIDNHHRTIEEGPFSELRIRSRKATLSDCSEFLRGGIDICVLSASQQSGDTNSDGFSDNKVWVDAKINSIQRKPHSSGCSCLYYVNLYVNQGSLGRKIRTLSKEVKVIGINEIAILQKLDRSVCEDQHYRWELSEDCSNLSHTKLINGKFLSDLSWLVVISSLKKVSFCVRSVQNKIVYQILDRDVGSSSLNMKPRISVFNFEVSHDGTLKPIVTQVDASDTDANGHADDSRDDVQGLRRSGRRNIPPERYFSCDNVSEIKVGDVRTWPYKTKKGKEDGDDMCSSREIKVYCRRNRKNEIKSGEDGQNEHQTQLASVSLLEEGDSLVPEHHALNDNVTRGNANYSNTERKRKRPLDLKGDEGCDPGCGDLNSNLNFNRRNDRSLNASAYEEMIDSYFKDIYRTPTKEEPTVMEVWNEINRSEKKKEAETPQTEEDEQISEIDMLWREMEMAMASYHIEEDSNAANFVENSEEPNHTCPHDYRLNEQIGICCFKCGSVKTEIKYVTPPFLEKHYRARHQEERQCSGEEGDKDDVFHQLSTRDELTSMEHDNVWKLIPELREKMHVHQKKAFEFLWQNIGGSTDPTLMDAESERRGGCIISHSPGSGKTFLIIAFLISYSKLFPGMKPLVLAPTTTLHTWHKEFIKWDISMPVYLIHGSRRPQRDDMQNSIALPPFLHPNRDVKHILNCLDKIKKWQANPGVLIMSYASFLALMREGSGFTPRKYLAKALRESPGILILDEGHNPRSTKSKLRKVLMKVQTDIRILLSGTLFQNNFCEYFNTLCLARPKFIYEVLKELDPNDRRKRKRAEKERHLLESQARKLFLDNIAGKVDSSDEHERMQGLTMLKKITSGFVDIYESTSFDSVPGLQMYTLLMNTGGMQSEILEKLHRKMADCAGFPLELELLIILGSIHPWLVKTASYAEKFIPLEQLQQLEKCRYDLKVGSKVKFVMSLVLRVMEKEKVLIFCHNHAPVKLLVELFEVVLKWQKGREILLLNGEQELFERGKVIDKFEEAKGPSKVLLASITACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQKKMVYVYQLLATGTLEEDKYKRTTWKEWLSSMIFSEAFHENTSHSQVEMIEDDILREIVEEDKSKSIHMILKNHKASTNSTELNRSI 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03265 1193 MobiDBLite consensus disorder prediction 372 406 - -
Viun1g03265 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 991 1161 IPR001650 -
Viun1g03265 1193 Gene3D - 576 868 IPR038718 -
Viun1g03265 1193 Pfam Helicase conserved C-terminal domain 988 1104 IPR001650 -
Viun1g03265 1193 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 54 1184 IPR044567 GO:0080188
Viun1g03265 1193 Coils Coil 847 867 - -
Viun1g03265 1193 Pfam SNF2-related domain 628 866 IPR000330 GO:0005524|GO:0140658
Viun1g03265 1193 MobiDBLite consensus disorder prediction 388 406 - -
Viun1g03265 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 1146 IPR027417 -
Viun1g03265 1193 CDD SF2_C_SNF 980 1116 - -
Viun1g03265 1193 Gene3D - 945 1192 IPR027417 -
Viun1g03265 1193 MobiDBLite consensus disorder prediction 266 289 - -
Viun1g03265 1193 SMART helicmild6 1020 1105 IPR001650 -
Viun1g03265 1193 SMART ultradead3 601 848 IPR014001 -
Viun1g03265 1193 MobiDBLite consensus disorder prediction 263 289 - -
Viun1g03265 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 830 IPR014001 -
Viun1g03265 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 833 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03265 Viun-Chr1 40343835 40348150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03265 1018 1161 RAD5 or RAD16-like Gene Family AT5G05130 36.301 4.76e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun1g03265 SNF2_N 2.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03265 K10875 - gmx:100781856 1567.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03265 1 40343835 40348150 Viun1g03265 1 40343835 40348150 ECH
Viun1g03265 1 40343835 40348150 Viun8g02388 8 33747420 33754362 PCT