Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03260 ATGGATTCCGACTTCCCGAACAAAGCGTTGACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTTTCCGACTCCGTTCTACAGGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTCAAAGACGTTGCCGTCGATGCCGCCACCGGTTCCGGTAAAACCCTAGCCTTTGTCGTTCCTCTCGTCGAGATTCTGCGCCGGTCCTGCTCTCATCCCAAGCCTCACCAGGTGCTAGGGATAATTATATCTCCTACAAGGGAGCTTTCAACCCAAATATATAATGTGGCACAACCATTCATTTCGACATTGGTGAATGTTAAGTCCATACTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACGCCTGGGCGGTTACATGACATAATGAATCGGATGGATGTCTTGGATTTGAAAAACTTAGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTATATTGCCTAAGCTTCGTCGGACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCGGGACTGAGAAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATCCTGCGTCATCAAAACAGCCAGAGTCTTCAAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGCAGATAAGAAGCCATCACAGCTCATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAGCTGTTCTTCCTAGTCTTTCTGTTTTGAAAGGTTTCTCCTTGATTCCTCTACATGGAAAGATGAAGCAGTCTGCAAGGGAGAAAGCACTGGCTACATTTACATCCCTTTCAAATGGAATTCTGCTATGTACGGATGTTGCTGCACGAGGACTTGACATACCAGGCGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCTCGGCTGGGAAAACAGGGTCATGCAGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATTCCTCTCCAAGAGAGAATATGTTCTGATGGTGCATTGGATATTGTTCCTCAGATTCGTTCTGCTGCAAAAAAAGATCGCGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCTAGAGGTCAAACATCACTCCCTTTCCACTGACGGATTTGAACCAGTTGAAGATATCAATTTCGCAGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTACAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACCAAAGAAAACCCCAGATGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAACAGACAATAGAAGACGAGGAGGAGTTGATGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1764 0.432 MDSDFPNKALTSTRFSDLNPPLSDSVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSHPKPHQVLGIIISPTRELSTQIYNVAQPFISTLVNVKSILLVGGAEVKADIKKIEEEGANILIGTPGRLHDIMNRMDVLDLKNLEILILDEADRLLDMGFQKQITSIISILPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDPASSKQPESSKTPSGLHIEYLECEADKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGAVLPSLSVLKGFSLIPLHGKMKQSAREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLQERICSDGALDIVPQIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMLEVKHHSLSTDGFEPVEDINFADIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKPKKTPDAVMRKKTARQRRAQQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03260 587 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Viun1g03260 587 MobiDBLite consensus disorder prediction 504 555 - -
Viun1g03260 587 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Viun1g03260 587 Coils Coil 503 523 - -
Viun1g03260 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Viun1g03260 587 Gene3D - 254 488 IPR027417 -
Viun1g03260 587 MobiDBLite consensus disorder prediction 227 249 - -
Viun1g03260 587 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Viun1g03260 587 CDD DEADc_DDX55 26 224 - -
Viun1g03260 587 SMART helicmild6 290 375 IPR001650 -
Viun1g03260 587 SMART ultradead3 34 254 IPR014001 -
Viun1g03260 587 Coils Coil 537 564 - -
Viun1g03260 587 CDD SF2_C_DEAD 254 384 - -
Viun1g03260 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Viun1g03260 587 SMART DUF4217_3 413 476 IPR025313 -
Viun1g03260 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Viun1g03260 587 PANTHER RNA HELICASE 12 520 - -
Viun1g03260 587 Gene3D - 3 227 IPR027417 -
Viun1g03260 587 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Viun1g03260 587 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Viun1g03260 587 FunFam RNA helicase 9 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03260 Viun-Chr1 40292630 40297577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03260 22 410 Eukaryotic Initiation Factors Gene Family AT3G13920 29.231 9.79e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03260 K14809 - gmx:100801482 1060.06