Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03258 ATGGCTGGGAATTCTCCATGTGCTTCATGCAAGCTTCTGAGACGCAGATGTACCAAAGAATGCATCTTTGCTCCTTATTTCCCTTCCAATGACCCTCAAAAGTTCGCCTTAGTTCACAAGGTTTTTGGCGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCTATTGAGCAGAGAGCAGATGCTGTGAGTAGTTTGGTGTACGAAGCACATGCAAGAGTTCGGGACCCTGTGTATGGTTGTGTTGGGGCCATATCCTATTTACAGAACCAGGTTTCTGAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAGCAGGAGCCAGTGATGCCGAATCCAGAAATGGAAAACCCAGATCAGAAATCTTACCTTCTCCAGAATGAACTCCCTCAGTTTCTCAACTATGCCTCTTCTAGCAATGTAATTTACGATGCTGTCTCAAGAGACAACATTTTTGGACATGATATGGTTTCATGA 498 0.4498 MAGNSPCASCKLLRRRCTKECIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIEQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQEPVMPNPEMENPDQKSYLLQNELPQFLNYASSSNVIYDAVSRDNIFGHDMVS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03258 165 Coils Coil 85 105 - -
Viun1g03258 165 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Viun1g03258 165 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Viun1g03258 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03258 Viun-Chr1 40271502 40272583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03258 3 117 AS2 family AT2G30130 86.087 7.59e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun1g03258 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03258 - - gmx:121173085 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03258 1 40271502 40272583 Viun8g02382 8 33704050 33704998 ECH
Viun1g03258 1 40271502 40272583 Viun1g03258 1 40271502 40272583 ECH
Viun1g03258 1 40271502 40272583 Viun8g02382 8 33704050 33704998 PCT