Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03253 ATGACAAAAAACTGGAAATCCAGCTGTTTCAGGGATCATCTGTTCCTTCTAGCGTTGTGTTTGTTGTTTCAGAACTTTAGTTCCTGTTGCTCTTTGAATGAAGAAGGTAAAGCTCTTCTGAAGTTCAAGCAGGGAATAGTAAGAGACCCTTTTGGTGCTTTGTCAAATTGGGTTAACGATGAAGTAGCAATTAACCATTGTAATTGGTTTGGAGTTGAGTGCTCTGCTGGAAGAGTGGTAGTCTTGAATTTGAAAGACCTTTGTCTTGAAGGAAATCTGGTACCTGAGCTCGCGAACCTTGTCCACATAAAGTCCATAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCCGAAGGAATTGCTCACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACATCTACCTACAGATCTTGGGAATAATATTTCAATGACAATCCTTTTGTTGGACAACAATGAACATCTCTGCGGTTTCTCTCCTGAAATTAATAAATTGAAGTTGATTTCTGAATATCAAGTAGATGAAAGACTACTGAGTATGGCAGAAAAAGTGCCAGCTTGTACAAGAAGATTCGTCAAACGGCACACTGGCAAAAACAAGAAAGGTTTAAGGAGGCTACTGCAATCTCCTCGTCATAGTCCTTTTAACCGTGCCGCTAGTTTTCCTGATAGTCCTCCTCCATCTTCTTCAGCTCCCTCACCGGCCCCAGCAACACCACCACCGGTTGAGGAGCCAGCTTTCACTGACCGAAATGATTCTGCTTCTAATTCTCTTTCTCCTTCTCCTCTGCCTGAACCACCATCTACAAGTGGCTCGTCAAAGAACAATCTTGTTGTTATTTTGGTTGGAGTTATAGGTGGTGTTGTATTTCTTGTCATTTCAAGCATTGGCATATATCTCTGCAAAACAAACAAGGTAGCTACTGTAAAACCTTGGGCGACAGGATTAAGTGGACAGCTTCAGAAGGCATTCATAACAGGTGTGCCAAAGCTGAAGAGATCCGAGCTTGAAGCAGCGTGTGAAGATTTTAGTAATGTAATTGGCACTTCTTCCATTGGTACAGTGTACAAAGGGACTTTGTCCACTGGTGTTGAAATAGCCGTGGCCTCTGTTGCAGTGACATCATCGAAAGATTGGTCAAAGACTTTAGAAGCCCAATTTAGGAAGAAGATAGATACATTATCAAAAGTTAACCACAAGAATTTTGTAAATCTTCTTGGACATTGTGAAGAAGACGAGCCTTTCACCAGAATGGTGGTTTTTGAGTACGCCCCAAATGGAACACTCTTTGAGCATTTGCACATAAAAGAAGCCGAGCACTTGGATTGGGAAACAAGACTTAGAGTTGCCATGGGCATGGCTTACTGCCTACAACATGTGCACCAGTTGGAGCCTCCTTTGGTTCTTGGCGACCTGAATTCTTCAGCTGTTCAACTCACGGATGATTGTGCTGCCAAAGTCTCTGATTTGAGTTTCTTAACTGAAATAGCTTCAGCGGTGATGAAATCTTCTGTTAGACAACACCCTGACATGACCCCAGCAAGTAACATTTACAGTTTTGGTGTTATATTATTTGAAATGGTGACAGGCAGGCTCCCTTATTCAGTGGACAATGATGGCTCACTTGATGACTGGGCTTCACAATATTTACATGGAAATCAGCCCCTCAAAGAAATGGTGGATCCATCTCTGGCGTCCTTCCAAGAAGAACAGCTGGAACAAGTTGATGCTTTGATCAAATCTTGTGTGCATCCTGATCCAAAGCAAAGACCATCTATAAAAGAAGTTTGTTTGAGATTAAGAGAGATAACAAAGATAACACCCGAGGCAGCTGTTCCAAAACTTTCTCCACTTTGGTGGGCGGAGCTTGAGATTGCCTCGGTAAATGGAAACTGA 1917 0.4215 MTKNWKSSCFRDHLFLLALCLLFQNFSSCCSLNEEGKALLKFKQGIVRDPFGALSNWVNDEVAINHCNWFGVECSAGRVVVLNLKDLCLEGNLVPELANLVHIKSIILRNNSFYGIIPEGIAHLNELEVLDLGYNNFSGHLPTDLGNNISMTILLLDNNEHLCGFSPEINKLKLISEYQVDERLLSMAEKVPACTRRFVKRHTGKNKKGLRRLLQSPRHSPFNRAASFPDSPPPSSSAPSPAPATPPPVEEPAFTDRNDSASNSLSPSPLPEPPSTSGSSKNNLVVILVGVIGGVVFLVISSIGIYLCKTNKVATVKPWATGLSGQLQKAFITGVPKLKRSELEAACEDFSNVIGTSSIGTVYKGTLSTGVEIAVASVAVTSSKDWSKTLEAQFRKKIDTLSKVNHKNFVNLLGHCEEDEPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWETRLRVAMGMAYCLQHVHQLEPPLVLGDLNSSAVQLTDDCAAKVSDLSFLTEIASAVMKSSVRQHPDMTPASNIYSFGVILFEMVTGRLPYSVDNDGSLDDWASQYLHGNQPLKEMVDPSLASFQEEQLEQVDALIKSCVHPDPKQRPSIKEVCLRLREITKITPEAAVPKLSPLWWAELEIASVNGN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03253 638 SUPERFAMILY Protein kinase-like (PK-like) 331 607 IPR011009 -
Viun1g03253 638 SUPERFAMILY L domain-like 32 169 - -
Viun1g03253 638 FunFam Nuclear pore complex protein NUP107 32 190 - -
Viun1g03253 638 Gene3D Transferase(Phosphotransferase) domain 1 431 619 - -
Viun1g03253 638 Pfam Protein tyrosine and serine/threonine kinase 350 605 IPR001245 GO:0004672|GO:0006468
Viun1g03253 638 MobiDBLite consensus disorder prediction 232 250 - -
Viun1g03253 638 Gene3D Ribonuclease Inhibitor 30 208 IPR032675 -
Viun1g03253 638 MobiDBLite consensus disorder prediction 221 279 - -
Viun1g03253 638 Gene3D Phosphorylase Kinase; domain 1 320 430 - -
Viun1g03253 638 FunFam Inactive receptor-like serine/threonine-protein kinase 322 430 - -
Viun1g03253 638 ProSiteProfiles Protein kinase domain profile. 348 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03253 638 PANTHER PROTEIN MALE DISCOVERER 2 12 635 - -
Viun1g03253 638 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03253 Viun-Chr1 40232882 40236878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03253 31 615 Receptor kinase-like Gene Family AT2G35620 24.959 2.45e-44 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun1g03253 PK_Tyr_Ser-Thr 2.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03253 - - gmx:100784541 1007.67