Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03243 ATGCCCCCAGAATCTTCACACAAATCTTTCACAGTTACTCACTCGCCCCCAACAAATAAATACCACCCTCAGAACACAAACCTAACCTATGCTTCAAACTTCAAACTGCCAAAAATGGTGCGTGTCAAAGAAGCTCACGTTGTCACACCGTCAGAACCCACACCCAACACTGTCCTCCCACTCTCAGCACTCGACTCGCAACTCTTCTTGCGCTTCACAATCGAGTATCTCCTTGTTTACAGGCCCGCCCCGGGCCTCGACCGGGCTTCAACCGCCGCTCGTTTAAAAACCGCATTAGCTAAAGCGCTTGTTCCTTATTATCCATTTGCTGGAAGAGTCCGGCCCCAGCCCCAGGGGCTGGGCCTCGAGGTCGTGTGTCGGGCCCAGGGCGCTGTCTTCATCGAAGCCTCTTCCGAACGCTACAGTGCCAATGATTTCCAAAAGGCCCCCAAAACAGTGGCCCAATGGAGAAAGCTCTTATCCCTCTACGTCACTGACGTCCTCAAAGGCTCGCCGATTCTCGTCGTCCAGCTCACGTGGCTCGCCGACGGGGCCGCCGCCGTCGGCGTCGGAATCAACCACTGCATCTGCGACGGCATCGGCAGCGCTGAGTTTCTGAATTACTTCTCCGATTTAGCGTCGGAGAAATGTCAGGGTCTGGGTCTCGGTGTGGGTGTGGGTGTGGATCCGAAGCCGAAACCGGTTTGGGATAGACATCTTATGAATCCGGATAACCGAAGCGAGGCGAATCCAGCGATGCATGCTGAGTTTTGTGGAGTTCCTGATTTGTGCGGGTTTATGAACCGTGTGACGAGCAGGCTGAAACCTACTTGCATTGTGTTGGACGAGAGACGCATCGAGGCGCTGAAGCGCGCGTGCGGAGGAGCGTCGTGCACGTCCTTCGAGGTGGTGGCCGCGCACGTGTGGAGGAGCTGGGCTCGGGCGTTGGGGTTTCCGAAGAACCAGACGCTGAAGCTTTTGTTCAGCGTGAACGTGCGGAAGCGCGTGAAACCGGGTTTGCCGGAGGGGTACTACGGGAACGCGTTTGTGTTGGGGTGCGCGCAGAGCAGCGCGTGGGAGTTGGGGGAGAGAGGGGTGGCTCACGTTGTGAGTGCGGTGAAGCGTGCGAAGGAGAGGGTGGATAGCGAGCACGTGCGGAGGGTTGTTGAGTTGGTTTCCGAGTCAAGGGCGAGTCCTGACTCGGTGGGGGTGCTGATTCTGTCGCAGTGGTCGAGGCTGGGTTTGGAGAGGGTTGAACTAGGCATGGGAAAGCCTCTGCATGTGGGACCCATTTGCTGCGATAGGTACTGTTTGTTTCTTCCGGTGACCGGAGAACGCCACAGCGTGAAGGTCATGGTGGCCGTCCCCACCGCCGCCGTTGACAATTTCCATCGCTTCCTCCGGGAATCCAATTCATGA 1419 0.5715 MPPESSHKSFTVTHSPPTNKYHPQNTNLTYASNFKLPKMVRVKEAHVVTPSEPTPNTVLPLSALDSQLFLRFTIEYLLVYRPAPGLDRASTAARLKTALAKALVPYYPFAGRVRPQPQGLGLEVVCRAQGAVFIEASSERYSANDFQKAPKTVAQWRKLLSLYVTDVLKGSPILVVQLTWLADGAAAVGVGINHCICDGIGSAEFLNYFSDLASEKCQGLGLGVGVGVDPKPKPVWDRHLMNPDNRSEANPAMHAEFCGVPDLCGFMNRVTSRLKPTCIVLDERRIEALKRACGGASCTSFEVVAAHVWRSWARALGFPKNQTLKLLFSVNVRKRVKPGLPEGYYGNAFVLGCAQSSAWELGERGVAHVVSAVKRAKERVDSEHVRRVVELVSESRASPDSVGVLILSQWSRLGLERVELGMGKPLHVGPICCDRYCLFLPVTGERHSVKVMVAVPTAAVDNFHRFLRESNS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03243 472 PANTHER ACYL TRANSFERASE 4 40 467 - -
Viun1g03243 472 Gene3D - 38 258 IPR023213 -
Viun1g03243 472 Pfam Transferase family 39 464 - -
Viun1g03243 472 Gene3D - 268 469 IPR023213 -
Viun1g03243 472 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03243 Viun-Chr1 40203600 40205228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03243 40 469 Monolignol Biosynthesis Gene Families AT5G48930 27.434 8.83e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03243 - - pvu:PHAVU_001G244800g 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03243 1 40203600 40205228 Viun8g02364 8 33545600 33547712 PCT