Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03242 ATGAAGGGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTATTGAAGAGAAGATGCGTACCCAATTGTATTTTTGCACCTTACTTTAGGTCTGATGAGTGCAAGAAGTTTGCCAAGGTTCACAAGGTATTCGGAGCCAGCAATGTGAGCAAGATCTTGATCGAAGTGTCGGAAGAGCAGAGAGAGGACACGGTGAATTCTCTGGCATATGAGGCGGAGGCAAGGCTGAGAGACCCCGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAGAGGAAGATGGTGGAGCTTCAGCATGATCTCGCCATTGCTAAGGATCGTCTTGCACGATGTCACGCTGCTGCTACTGTTCTCCCTTCTCCTGATATCTTGCATGCCCATGTTAGCCTCCCTCCATTCCCTGACTTTTGCACTTCCTCCAATGATTTCAATGATATCTTCTGCCACAGTTCGTCATCTCAATTATTGAGCCGCCATGAAACGGTGGATGATTTCAATCAAATCCCATATATATTTTAA 528 0.464 MKGYEPRSSSSCAACKLLKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAATVLPSPDILHAHVSLPPFPDFCTSSNDFNDIFCHSSSSQLLSRHETVDDFNQIPYIF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03242 175 Coils Coil 90 110 - -
Viun1g03242 175 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Viun1g03242 175 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Viun1g03242 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03242 Viun-Chr1 40195796 40196714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03242 1 111 AS2 family AT3G11090 80.180 5.54e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun1g03242 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03242 - - gmx:100791250 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03242 1 40195796 40196714 Viun1g03242 1 40195796 40196714 ECH