LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g03239	ATGGCAAGCCCAGATACACGACCATTCACTTGGCACTACACAGAACTCGATGACAGAGACCTCGAGATCCGAGGAAGGACTTTGTTCTTCGTCATAGTACTCTTCTCCATTATCCTTCTCGTCACGGTTCTCTTCATATACACGCGCTGGGTTTGCCGCTACCAGGGGCGCCTTCCAACCACAGCGTTTTCCGCCGCTGCCCACGCGCCGTCACTCCCTCAGTCACAGGGACTGGACCCCGCAATCCTCAAGAAACTGCCCATAATCCTTCACCACGCGCCCTCGGATCGCGACGAAAACTCGTGGGACGAGACGGAGTGTTGCATCTGCCTCGGCGAGTTCGGAGACGGCGAGAAAGTGAAGATTTTGCCGGCGTGCGACCATTATTTCCATTGTGAATGTGTTGATAGGTGGCTCACTCACCACTCAAGTTGCCCTCTCTGCAGAGCTTCTCTCGAGGTTGAACTTTCTTTCCCAAAGGTTTTGATTCAGGAACCACCCCTCAGAATTGATTTCCAGTTCTAG	525	0.5333	MASPDTRPFTWHYTELDDRDLEIRGRTLFFVIVLFSIILLVTVLFIYTRWVCRYQGRLPTTAFSAAAHAPSLPQSQGLDPAILKKLPIILHHAPSDRDENSWDETECCICLGEFGDGEKVKILPACDHYFHCECVDRWLTHHSSCPLCRASLEVELSFPKVLIQEPPLRIDFQF	174

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g03239	174	SMART	ring_2	107	148	IPR001841	-
	Viun1g03239	174	CDD	RING-H2_EL5-like	106	149	-	-
	Viun1g03239	174	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	28	155	-	-
	Viun1g03239	174	Pfam	Ring finger domain	106	149	IPR001841	-
	Viun1g03239	174	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	66	155	IPR013083	-
	Viun1g03239	174	SUPERFAMILY	RING/U-box	98	156	-	-
	Viun1g03239	174	ProSiteProfiles	Zinc finger RING-type profile.	107	149	IPR001841	-
	Viun1g03239	174	FunFam	RING-H2 finger protein ATL66	70	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g03239	Viun-Chr1	40176416	40177709	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g03239	11	157	C3H Transcription Factor Family	AT3G11110	43.333	3.90e-36	121

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g03239	-		-	gmx:100794927	333.954

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun1g03239	1	40176416	40177709	Viun8g02362	8	33519107	33519855	PCT