Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03238 ATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAGAACTACTATGATTCTGGCTGGCACATGGGCACCACCTGGGCTCAATGCAGTGATCATTCTTCTTCCTTCGCAGTTCCTACACAAATACTTCCTCATGTCACTGACTCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCACTTCCCATTGAAGGCGCTGCAGAAGACAGAGCAATGAGTGCTTCCAAGAGTCACAGTCAAGCTGAGAAAAGGCGCAGAGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTTATTCCCAAGTCCGATAAGATGGACAAGGCAGCTTTGCTAGGGAGTGTGATAGAGCATGTGAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCTTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTGTGATCATGTTGAAGATGAAAGCTGCACTAAAGTGAACAAATTGAAGGAGAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCATCCAAGTCCTGAAGGGGTTGAGACTCACTGCAGTTAAAGCTGACATAGCCAGTGTAGGTGGTCGGATCAAAAGCAAATTGGTGCTTTGTTCTAAGGATAGTGAAGAGGGTGTTTGCCTCACCACTCTCAAACAGTCCCTCAAATCTGCTGTCACCAAAATAGCTTCATCATCCATGACATCTAATTGCCCCACCAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCGTTGCCTACAGTAA 819 0.4432 MGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTTWAQCSDHSSSFAVPTQILPHVTDSASLQFGEFHSWPLPIEGAAEDRAMSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIEHVKDLKRKAMDVSRAFTVPTEIDEVSIDCDHVEDESCTKVNKLKENIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSKLVLCSKDSEEGVCLTTLKQSLKSAVTKIASSSMTSNCPTRSKRQRFFLPSRCLQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03238 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Viun1g03238 272 Pfam Helix-loop-helix DNA-binding domain 86 132 IPR011598 GO:0046983
Viun1g03238 272 PANTHER TRANSCRIPTION FACTOR BHLH30 74 266 IPR045847 GO:0003700|GO:0006355
Viun1g03238 272 Gene3D - 77 141 IPR036638 GO:0046983
Viun1g03238 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 135 IPR036638 GO:0046983
Viun1g03238 272 CDD bHLH_AtAIG1_like 78 155 - -
Viun1g03238 272 SMART finulus 89 138 IPR011598 GO:0046983
Viun1g03238 272 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03238 Viun-Chr1 40164059 40165882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03238 21 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.748 2.63e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g03238 HLH 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03238 - - gmx:100799687 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03238 1 40164059 40165882 Viun1g03238 1 40164059 40165882 ECH
Viun1g03238 1 40164059 40165882 Viun8g02360 8 33492284 33494019 PCT