Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03224 ATGAAAACACTACCTTCCTCCTCCGTGCCTCTCTGTCTCGTCGCCGTTCTGCTTGTACTCTCTCTGCCACGCTCTTCCCATGGCCTCGGCTCCGGCGCTACCCTTGCCGTCTCTGACGCCTCCGCCACCGTGTGCGCCGTCGTGGCAGGCGAGTCCATTCGCCGCATTCAGTGTTACCGTCAGGGGCAGAATGTCTCCATCATTCCCAACGTTAATTTTTCGATGATTTCGGGTGGGAGGAACTACTTCTGTGGTCTAAGGTCAAGTAACTCAGATTTATATTGTTGGAACACAAACTCTTCCTTCGAAACGAGAAGGCTTTACAACGATAGTTCTGTTCCATTGGAGAATCTGGCAGTTGGGGATACCCACGTTTGCGCCACCGAGGTGGGTGGTGGCACGGTCAGGTGCTGGAGAACCGGTGACACGTTTCAGCTTCCTTCTGTGACTGATACATTCGGTTCAATTTCATCTGGGTCTGGCTTCTCTTGCGGAATTTTGAAGAATAGTTCTCGTGTTCGGTGCTGGGGAGACACCAGCGTTTCGGATTTATCGGAACGGATTGAGAATGCATTTGGGAACATGTCCATGTTGAGTCTTGTCGCAGGTGGTTCACATGTTTGTGGATTGAACTCAACTGGGTTTGTGGCATGTGGAGGAAACAACGATTCCGGACAACTTGATTTTCCTCAAGGTGGAGCTTTTGAGTATTCTGCGGTGGCGCTTGGAGCCGATCATGGTTGCGCTATTAGAGGATTGAATGGTTCGGTTGTGTGTTGGGGTGGCAATGGGGGATTCTCGGGGACTAATATTACTGATGGAGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAATTTTGTTTGTGGATTGACAACAAACGATTTGACAGTGGTGTGTTGGGGTCCTGGTTGGTCTAATAGTTCGACGTTTGAGCTTCCTTTTCCAACTGTTCTTCCAGGGTCTTGTGTTCAATCTTCTTGTGGAGAGTGCGGTTCATATCTTGATTCCCAATCTCTATGCTCTGGCTCGGGTAACATTTGTAAACCAATGACTTGTAAGCGTCAAACAACAGCTCCACCGCCGCCATCACCGTCACCGCCTCCACCATCAATGTCACCGCCGCCACCATCACCACCACCGCCACCACCTTCGTCATCACGATCAAAGACCTTGACAAACGGGTTATTGGCATTTGCTATTATCGGTTCTGTGGGGGCTTTTGCTGGGATATGCACTATAGTTTATTGCTTGTGGAGTGGTGTTTGTTTTGGGAAGAAAAAAGTCCACAATTCTGTGCAGCCTACAATCACGAGAGGTAGCAGTGGTTCAAACGGTGGGGGTGCTTCTAATAATAGCAATTCTTCAATATCGTCTATGATTATGCGTCAGACTTCAATAATAATGAGACGGCAGAGGAGTGGAACGTCATCAACGAAGCACCCAGACAGGGCTGAGGAGTTCACCCTGGCTGAGCTTGTGGCAGCCACCGACAATTTCTCACCGGAGAACAAGATTGGAGCTGGAAGCTTCGGTGTTGTGTACAAAGGCAAACTCGCGGATGGACGCGAAGTGGCAATCAAGAGGGGTGAAACTGGTTCCAAGATGAAGAAGTTTCAAGAGAAGGAAAGTGCATTTGAGTCCGAATTGGCCTTCTTGTCTCGCCTACACCACAAGCACCTGGTTGGTCTAGTTGGGTTCTGCGAAGAGAAAGACGAGAGGCTGTTGGTGTATGAGTACATGAAGAATGGGGCGCTGTATGATCATTTGCACGACAAGAAGAATGTGGAGAAGGGTAGCAGTGTGTTGAATGATTGGAAAATGAGGATAAAAATTGCTTTGGATGCTTCCCGGGGTATAGAATATCTTCATAATTATGCAGTTCCATCAATTATTCACAGAGACATAAAGTCTTCTAACATTCTCATTGATGCTACTTGGACGGCAAGAGTATCAGATTTTGGATTGTCTATGATGAGTCCAGAACCTGACCGTGATCACCGACCAATGAAGGCAGCAGGAACCGTTGGATACATTGATCCTGAGTACTACGGTTTAAATGTATTGACGGCAAAGAGTGATGTGTATGGACTTGGAGTTGTACTGCTGGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGGGAAGACGGAGGCACCCCACTGAGTGTGGTGGACTTTGCAGTGCCTCGTATTTTGGCTGGAGAATTGGTGAAAATTTTGGATCCAAGGGTTGGACCACCCGACGTGAATGAGGCAGAGGCAGTGGAATTAGTGGCCTATACAGCTATCCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGGCTGACATTGTGATCAATTTAGAGAGGGCTTTGGCTATTTGTGAGAGTAGCCATCATAGCATTTCCAGTGGCTCTATCACTGTTGTTTCAGAATGA 2427 0.4763 MKTLPSSSVPLCLVAVLLVLSLPRSSHGLGSGATLAVSDASATVCAVVAGESIRRIQCYRQGQNVSIIPNVNFSMISGGRNYFCGLRSSNSDLYCWNTNSSFETRRLYNDSSVPLENLAVGDTHVCATEVGGGTVRCWRTGDTFQLPSVTDTFGSISSGSGFSCGILKNSSRVRCWGDTSVSDLSERIENAFGNMSMLSLVAGGSHVCGLNSTGFVACGGNNDSGQLDFPQGGAFEYSAVALGADHGCAIRGLNGSVVCWGGNGGFSGTNITDGVSFEVIVSGSNFVCGLTTNDLTVVCWGPGWSNSSTFELPFPTVLPGSCVQSSCGECGSYLDSQSLCSGSGNICKPMTCKRQTTAPPPPSPSPPPPSMSPPPPSPPPPPPSSSRSKTLTNGLLAFAIIGSVGAFAGICTIVYCLWSGVCFGKKKVHNSVQPTITRGSSGSNGGGASNNSNSSISSMIMRQTSIIMRRQRSGTSSTKHPDRAEEFTLAELVAATDNFSPENKIGAGSFGVVYKGKLADGREVAIKRGETGSKMKKFQEKESAFESELAFLSRLHHKHLVGLVGFCEEKDERLLVYEYMKNGALYDHLHDKKNVEKGSSVLNDWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSMMSPEPDRDHRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGTPLSVVDFAVPRILAGELVKILDPRVGPPDVNEAEAVELVAYTAIHCVNLEGKDRPTMADIVINLERALAICESSHHSISSGSITVVSE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03224 808 Gene3D - 28 188 IPR009091 -
Viun1g03224 808 SUPERFAMILY Protein kinase-like (PK-like) 476 784 IPR011009 -
Viun1g03224 808 MobiDBLite consensus disorder prediction 435 455 - -
Viun1g03224 808 Pfam Protein kinase domain 501 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03224 808 Gene3D Transferase(Phosphotransferase) domain 1 580 800 - -
Viun1g03224 808 MobiDBLite consensus disorder prediction 355 386 - -
Viun1g03224 808 Gene3D Phosphorylase Kinase; domain 1 459 579 - -
Viun1g03224 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Viun1g03224 808 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Viun1g03224 808 MobiDBLite consensus disorder prediction 354 389 - -
Viun1g03224 808 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 194 794 IPR044815 GO:0004674
Viun1g03224 808 SMART serkin_6 499 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03224 808 SUPERFAMILY RCC1/BLIP-II 42 263 IPR009091 -
Viun1g03224 808 FunFam Serine/threonine-protein kinase-like protein CCR4 580 802 - -
Viun1g03224 808 FunFam serine/threonine-protein kinase-like protein CCR1 468 579 - -
Viun1g03224 808 ProSiteProfiles Protein kinase domain profile. 499 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03224 808 Gene3D - 189 312 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03224 Viun-Chr1 40067874 40070589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03224 8 808 Receptor kinase-like Gene Family AT3G55950 58.709 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun1g03224 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03224 - - vra:106757659 1403.65