Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03223 ATGGCGAATTCAGGAGCATCCCTTGTCCACAGTTTTGCTTCGATTGTGGAAAATGCTCTTAGAAGTATTGGAGGAGATTTGGGGGCATTTCCTTTGCACGAATTTTCTATGGCAGTGGAGAATGCTTTGAGAAGTATTGGAGGAGATTTGGGAGCATTTCCTTTGCACGAATTTTCTATGACAGTGGAGAATGCTTTGAGTAGTATTGGAGGAGATTTGGGAGCATTGCCGGTGCATGGTTATGCTTCGGCCGTGGAGAATGCGATGAGAAGTATTGTAGGAGATTTTAGAGCCTTACCCGTGAATGGTTTTGCTTCGACAGTGGAGAATGCGATGAGAAGTACTGTAGGAGACTTTAGAGCATTACCCGTGCATGATTTTGCCTCGACAGAGGAGAATCCTATGCGTAGCATTGGAGGAGATTTGGGAATGTCTCATTCCCCTGTTCCTGGTTTTCAATTATACACCTTAGTGGAGCTTGCAGCAGCCACCGACAATTTCTCAGCTAACAACACGATTTGTGCTGGAAGCTCTAGTGTTGTGTACATAGGCAAACTCGTTGATGGTAGTGAGGTTGCAATAGAAAGGGTAGAAACAGGGTCGAGTAGAACGCCCGAAGAGGCCTTCTGGTGGAAGAGAATGTGTAGTTCGACCTTTGTGCCCGGTTTACGCCCCAAGAACTTGGTTGGGCTGGTTGGGTTGTGTGTAGAGAAAGATGAAAGGGTGTTGGTGTATGAGTGCATGAAGAATGGGTCGTTGAATGATCATTTACATGACAAGAGGAGCAATGTGTTGAATTCGTGGGAAATAAGGATAAAACTTGCTTTGGATGCTTCCAGAGGAATAGAATATCTTCATAAGTATGGAGTTCCATACACTGTTCATGGAGATATCAAGCCTTCCAACATTCTTATCGATGCTACATGGACCGCAAAGGTGTGTAACTTTGGGAAGAAAGCAGGAAGCATTGGATACATTGATCCTGAGTACTCAAGTGTTGGTGTATTGACAGAAAAGAGTGATGTGTATGGATTTGGAGTTGTGCTGCTTGAACTTTTAACAGGAAAGAGAGCTGCATGTGGGAAAAATGGAGGCAGCATATTACATGTACCCTTTGCAGAGGGTGCTATTTTGGGTGGAGATTTTGTGAAAATTTTGGATACAAGGATTGGAAAACCCCATCTGGGTGAAGCAGAGGCAGTGGAGTTAGTGGCTCATACTGCCATCAATTGCGTAAATGTGGTAGGGAAGGTTAGACCAACCATTGCTCAAGTTGTCGTCAATTTGGAGAGGGCTTATGCTTATTTCTTGTACAAGCCATGTTACTAA 1329 0.4417 MANSGASLVHSFASIVENALRSIGGDLGAFPLHEFSMAVENALRSIGGDLGAFPLHEFSMTVENALSSIGGDLGALPVHGYASAVENAMRSIVGDFRALPVNGFASTVENAMRSTVGDFRALPVHDFASTEENPMRSIGGDLGMSHSPVPGFQLYTLVELAAATDNFSANNTICAGSSSVVYIGKLVDGSEVAIERVETGSSRTPEEAFWWKRMCSSTFVPGLRPKNLVGLVGLCVEKDERVLVYECMKNGSLNDHLHDKRSNVLNSWEIRIKLALDASRGIEYLHKYGVPYTVHGDIKPSNILIDATWTAKVCNFGKKAGSIGYIDPEYSSVGVLTEKSDVYGFGVVLLELLTGKRAACGKNGGSILHVPFAEGAILGGDFVKILDTRIGKPHLGEAEAVELVAHTAINCVNVVGKVRPTIAQVVVNLERAYAYFLYKPCY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03223 442 SUPERFAMILY Protein kinase-like (PK-like) 142 434 IPR011009 -
Viun1g03223 442 SMART serkin_6 167 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03223 442 ProSiteProfiles Protein kinase domain profile. 167 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03223 442 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 137 434 IPR044815 GO:0004674
Viun1g03223 442 Gene3D Transferase(Phosphotransferase) domain 1 248 436 - -
Viun1g03223 442 Pfam Protein kinase domain 170 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03223 442 Gene3D Phosphorylase Kinase; domain 1 144 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03223 Viun-Chr1 40064107 40065435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03223 136 432 Receptor kinase-like Gene Family AT3G55950 48.348 5.93e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun1g03223 Pkinase 5.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03223 - - pvu:PHAVU_001G243700g 589.726