Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03222 ATGGCTTATTTCATAAGTGATCCAACAAGTTTCTGTTGGGCTGTGGACAGTGCCATAAGAAGTGAGACTGCCTCAAGTTTGGGAGCATCCCCTCCCCATAGTTTTGCTTCGGTGGTGGACTATGCATTGAGAAGCAGTTGTGCTTCTGAAGCAGATTTTGGAACGTCCCGTGTCCCCAGTTTTGGTTCGGGAGTGGACTATGTGATCAGGAGTAGTTATGGTGGAGGAACAGATTTCGAAACCTTCCCTGTGCCTGGTTTTCCTTCTGAGGTTTACTCTACCACTGTTGCTGAAGAGTCATCACCAGTGTTGTCATATGTCACAGAACATGCTGTTAAAGGCTTACGATTATTCAGCCAGGCTGAGCTTGCAGCAGCGACCAACAATTTCTCACTTCACAACAAGATTGGTGCTGGAAGGCTTGGTGTTGTGTACAAAGGCAAACTGGTTGATGGTCGTGAGGTTGCAATCAAGAGGGGTGAAACCTGGCGAAAGAAAAAGACCTCATCAGTTATATCTGCATTGACCTACTTGTCCCGTTTACACCACAGACACTTGGTTGGGTTGGTTGGATTCTGTGAAGAGAAATACGAGAGGATGTTGGTGTATGAGTACATGAAGAATGGTACCTTGTATGATCATTTGCATGAAAATGGTAGCAATGTGTTGAATTCGTGGAAAATGAGGATCAATATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTTCATAAGTATGCAGTCCCTCTATTTATTCACGGGGACATCAAGTCTTCGAACATTCTACTTGATGGCAGTTGGATGGCAAAGGTGTCTGATTTTAAAATGTGTTTGATGAGTGGAGAAGCTGAGGGTGATTACCGAGGAATAAAGGTAGGAGGAACAGTTGGATACATTGATCCTGAGTACTATGATCTAAATATGTTGACAGCAAAGAGTGATGTGTACGGGCTGGGAGTTGTACTGCTAGAGCTTTTAACAGGAAAGAGAGCTATATTCCTTGATGGGGAAAATGGAGGTAATACCCTATTAAGTGTGCACCGTTTGGTGGACTTTGCAGTGCCTACCATTTTGGATGGAGAATTGGTCAACATTTTGGATTGTAGGGTTGGAGCACCGGGTGTGAATGAGATACAGGCATTGGAGTTGGTGGCCCAAACAGCCATTCATTGTGTGAATCGGAAAGGGAAAGATAGACCATCCATGACTGATATTGTGGCCACGTTGGAGACAGCATTGGCCATCTGTTATGGTAGATCTTATCATAGGATGGATTTTGAAAATATAGTTTGGAAATACAAGAGATAG 1308 0.4381 MAYFISDPTSFCWAVDSAIRSETASSLGASPPHSFASVVDYALRSSCASEADFGTSRVPSFGSGVDYVIRSSYGGGTDFETFPVPGFPSEVYSTTVAEESSPVLSYVTEHAVKGLRLFSQAELAAATNNFSLHNKIGAGRLGVVYKGKLVDGREVAIKRGETWRKKKTSSVISALTYLSRLHHRHLVGLVGFCEEKYERMLVYEYMKNGTLYDHLHENGSNVLNSWKMRINIALDASRGIEYLHKYAVPLFIHGDIKSSNILLDGSWMAKVSDFKMCLMSGEAEGDYRGIKVGGTVGYIDPEYYDLNMLTAKSDVYGLGVVLLELLTGKRAIFLDGENGGNTLLSVHRLVDFAVPTILDGELVNILDCRVGAPGVNEIQALELVAQTAIHCVNRKGKDRPSMTDIVATLETALAICYGRSYHRMDFENIVWKYKR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03222 435 SUPERFAMILY Protein kinase-like (PK-like) 112 410 IPR011009 -
Viun1g03222 435 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 100 419 IPR044815 GO:0004674
Viun1g03222 435 ProSiteProfiles Protein kinase domain profile. 130 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03222 435 SMART serkin_6 130 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03222 435 Gene3D Transferase(Phosphotransferase) domain 1 206 420 - -
Viun1g03222 435 Gene3D Phosphorylase Kinase; domain 1 91 205 - -
Viun1g03222 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Viun1g03222 435 Pfam Protein kinase domain 131 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03222 Viun-Chr1 40057505 40058963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03222 109 416 Receptor kinase-like Gene Family AT3G55950 61.162 8.11e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun1g03222 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03222 - - vun:114193227 863.218