Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03221 ATGGCTGATATCGCAGTCGATGCAAGGAGTTTTAGTTGGGCAGTGGACGGTGCCATAGCGAGTGAGAGTGCGTCAGATATGGGAGAATCTTGTGTCCGCAGTTTTTCTTCGGTAGTGGATAGTGCCATAAGGAGTAGTAGTGCTACTGAAGCGGATTTTGAAACATCTCCTATTACTTGTTTTGCTTTTGCTTCTGCGGTGACCAAAAGAATTGTTGCTGAACGACTATCACAAGCAGTGTCGGATGGGACAGGACATGTTCATACACGATTATTCACCCTGGCCGAGCTTAAAGCGGCCACCAACAATTTCTCACTTCACAACAAGATTTTTTGTGCTGGAAGCATTAGTGTTGTGCACAGAGGCAAACTGTTTGATGGTCGTGAGGTGGCTGTCAAAAGGGCTGAAACCAGTTCCAAGAAGAAGGAGTTTCAGGAGGTATTCGGCTATTTATCGACCCTTTTGCCCTGCCTACGCCATAATCACTTGGTTGGGCTAGTTGGGTTCTGTAAAGAGAAAGATAAAAGGTTCTCGGTGTATGAGTACATGAAGAATGGGGCGTTATATGATCATTTGCACGACAAAAACAATGTGGACAAGGAGAGCAGTGTGTTGAACTCTTGGAGAATGAGGATCAAGATTGCATTGGATGCTTCCCGGGGAATAGAACACCTACACAAATATGTTGTTCCAAGTATTATTCACAGAGATATCACTTCTTCGAACATTCTTCTTGATGATAGTTGGACGGCAAAAGTATCTGGGTTTGAATCGTCGTGTTTCATGAGTCCAGAACCTGAGCATGTTTACACGGATACAAGTGTGTTGAAAGCAAAGAGTGATGTGTACGGGGTTGGAGTTGTGCTGCTTGAACTTTTAACAGGAAAGAAAACCACATTAAAGTATGGGAGAAATAGGGGCGGGAGCATGGTGAACGTTGCACGGCGTGCTATTTTGGGTGGGAAAATGGTGGAAATTTTGGATCCAAGGGTTGGAACTCCCAATATAAATGAAGAAGCAGGACTGGAATTAGTGGCCCAGACAGCGATCAACTGTGTAAATTTGAAAAGGAAAGATAGGCCAACTATGACTGAGGTTGTGACCAATTTGGAGACAGCTTTATCTATTTGCGACACTGGCCAATGA 1146 0.4424 MADIAVDARSFSWAVDGAIASESASDMGESCVRSFSSVVDSAIRSSSATEADFETSPITCFAFASAVTKRIVAERLSQAVSDGTGHVHTRLFTLAELKAATNNFSLHNKIFCAGSISVVHRGKLFDGREVAVKRAETSSKKKEFQEVFGYLSTLLPCLRHNHLVGLVGFCKEKDKRFSVYEYMKNGALYDHLHDKNNVDKESSVLNSWRMRIKIALDASRGIEHLHKYVVPSIIHRDITSSNILLDDSWTAKVSGFESSCFMSPEPEHVYTDTSVLKAKSDVYGVGVVLLELLTGKKTTLKYGRNRGGSMVNVARRAILGGKMVEILDPRVGTPNINEEAGLELVAQTAINCVNLKRKDRPTMTEVVTNLETALSICDTGQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03221 381 ProSitePatterns Tyrosine protein kinases specific active-site signature. 233 245 IPR008266 GO:0004672|GO:0006468
Viun1g03221 381 ProSiteProfiles Protein kinase domain profile. 105 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03221 381 Gene3D Transferase(Phosphotransferase) domain 1 183 378 - -
Viun1g03221 381 Pfam Protein kinase domain 113 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03221 381 Gene3D Phosphorylase Kinase; domain 1 63 182 - -
Viun1g03221 381 SUPERFAMILY Protein kinase-like (PK-like) 84 370 IPR011009 -
Viun1g03221 381 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 55 378 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03221 Viun-Chr1 40051371 40052516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03221 92 377 Receptor kinase-like Gene Family AT3G55950 52.336 8.69e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun1g03221 Pkinase 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03221 - - vra:106757051 586.26