Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03220 ATGACTCATTTGATGACAAGCTTTTGTTGGGCTGTGGACAGTGCCATAAGGAGTGAGACTGCGTCAAATTTGGGAGCATCCCCTGCCCACAGTTTTGCTTCGGTAGTGGACTATGCATTGAGAAGTAGTTCTGCTTCTGAACCAGATTTGGGAACGTCCCGTGTCCCCAGTTTTGGTTCGGGAGTGTTCTACGTGCGCGCTGAAGGGTCATCACCAGTGGGGTCCAATGTCACAGAAGATGTTATTAAAGGCTTACAATTATTCAGCAAAGCTGAGCTTGTAGCAGCGACCAACAACTTCTCGCTTGACAACAAGATTGGTGGTGGTGCTGTGTACATAGGCAAACTCCTTGATGGTCGTGAGGTTGCAATCAAGACGTGTGAAAAGACCTCAATTAAATCTAAATTGGCCTTCTTGTCTCGCCTACACCACAAGAACTTGGTTGGACTAGTTGGGTTCTGCGAAGAGAAAGATGAGAGGCTCTTAGTGTATGAGTACATGAAGAATGGTTCATTGTATTATCATCTGCATGAGAAGAAGAACGCGGAGAAGGGTAGCAGTGTGTTGAATGATTGGAAGTTGAGGATAAAAATTGCTTTGGATGTTGCCCAGGGAATACGATATCTTCATAATCATGCAATTCCATCAATAATTCACAGAAACATAAAGTCTTATAATATTCTTATGGATGCTACTTGGACGGCAAGAGTATCAGTATCAGACTCTGGATTGTGTTTGATGAGTTCAGAAGTTGACCGTGATCACCCACTTGGTTACGGTTTAAATGTATTGACGGGAAAGAGTGATGTGTATGGGTTTGGAGTTGTACTGCTGGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGCGAAGATGGAGGCATATTTGGAACTTTTATGAGTGTGGTGGACTTTGCAGTGCCTCGTATTTTGGCCGGAGAATTGGTTGAAATTTTGGATCCAAGGGTTGGACCACCTGATGTGGACGAGGTAGAGGCAGTTGAATTATTGGCCCATTTAGCTATCGATTGTGTGAATTGGAAAGGGAAAGATAGACCAACCATGGCTCACATTTCGTTCCAGTTAGAGAAGAGAGTTTCGTATTTTGAATCTATTCTTTAG 1125 0.432 MTHLMTSFCWAVDSAIRSETASNLGASPAHSFASVVDYALRSSSASEPDLGTSRVPSFGSGVFYVRAEGSSPVGSNVTEDVIKGLQLFSKAELVAATNNFSLDNKIGGGAVYIGKLLDGREVAIKTCEKTSIKSKLAFLSRLHHKNLVGLVGFCEEKDERLLVYEYMKNGSLYYHLHEKKNAEKGSSVLNDWKLRIKIALDVAQGIRYLHNHAIPSIIHRNIKSYNILMDATWTARVSVSDSGLCLMSSEVDRDHPLGYGLNVLTGKSDVYGFGVVLLELLTGKRAIFKYGEDGGIFGTFMSVVDFAVPRILAGELVEILDPRVGPPDVDEVEAVELLAHLAIDCVNWKGKDRPTMAHISFQLEKRVSYFESIL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03220 374 Gene3D Phosphorylase Kinase; domain 1 70 166 - -
Viun1g03220 374 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 79 368 IPR044815 GO:0004674
Viun1g03220 374 Pfam Protein tyrosine and serine/threonine kinase 110 360 IPR001245 GO:0004672|GO:0006468
Viun1g03220 374 Gene3D Transferase(Phosphotransferase) domain 1 167 371 - -
Viun1g03220 374 ProSiteProfiles Protein kinase domain profile. 52 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03220 374 SUPERFAMILY Protein kinase-like (PK-like) 77 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03220 Viun-Chr1 40048425 40049622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03220 88 365 Receptor kinase-like Gene Family AT3G55950 55.732 8.16e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun1g03220 PK_Tyr_Ser-Thr 5.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03220 - - vun:114193227 394.815