Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03218 ATGACTCATTTGATGACAAGTTTTTGTTGGGCTGTGGACAGTGCCATAAGGAGTGAGACTGCGTCAAATTCGGGATCATCCCCTGTCCATAGTTTTGCTTCGGTAGTGGACTATGCATTGAGAAGTAGTTCTGCTTCTGAACCAGATTTGGGAACGTCCCGTGTCCCCAGTTTTGGTTCGAGAGTGGACTATGTGATCAGTAGCAGTGATGGAGAAAGAACAGATGTGCGCGCTGAAGGGTCATCACGAGAGGCGTCCAGTGTCACAGGAAATCTTGTAAGAGGCTTCCAATTATTCAGCAAGGCTGAGCTTGTAGCAGCGATCAACAATTTCTCACTTCAGAACAAGATTGGTGGTGGTGCAGCGTACATAGGCAAACTCCTTGATGGTCGTGAGGTTGCAATCAAGAGGGTTGAAAGAATGATCTCAATTAAATCTAAATTGGCTATCTTGCCTCGCCTACACCACAAGCACTTGGTTGGACTAGTTGGGTTCTGCGAAGAGAAAGACGAGACGCTGTTGGTGTACGAGTACCTGAAGAATGGGGCGCTGTATGATCATTTGCACGAGAAGAAGAATGTGGAGAAGGGTAGCAGTGTGTTGAATGATTGGAAAATGAGGATAAAAATTGCTTTGGATGCTTCCCGGTGTATAGAATATCTTCATAATGCAGTTCCATCAATTATTCACAGAGACATAAAGTCTTCTAACATTCTCATTGATGCTACTTGGACGGCAAGAGTATCAGATTTTGGATTGTCTATGATGAGTCCAGAACCTGACCGTGATCACCGACCAATGAAGGCAGCAGGAACCGTTGGATACATTGATCCTGAGTACTACGGTTTAAATGTATTGACGGCAAAGAGTGATGTGTATGGACTTGGAGTTGTACTGCTGGAACTTTTAACAGGAAAGAGAGCTATATTCAAGTATGGCGAAGATGGAGGCATATTTGGAACTTTTATGAGTGTGGTGGACTTTGCAGTGCCTCGTATTTTGGCTGGAGAATTGGTGAAAATTTTGGATCCAAGGGTTGGACCACCCGACGTGAATGAGGCAGAGGCAGTGGAATTAGTGGCCTATATAGCCCTCCATTGTGTGAATTTGGAAGGGAAAGATAGACCAACCATGACTGACATTGTGAACAATTTAGAGAGGGCTTTGGCTATTTGA 1176 0.4456 MTHLMTSFCWAVDSAIRSETASNSGSSPVHSFASVVDYALRSSSASEPDLGTSRVPSFGSRVDYVISSSDGERTDVRAEGSSREASSVTGNLVRGFQLFSKAELVAAINNFSLQNKIGGGAAYIGKLLDGREVAIKRVERMISIKSKLAILPRLHHKHLVGLVGFCEEKDETLLVYEYLKNGALYDHLHEKKNVEKGSSVLNDWKMRIKIALDASRCIEYLHNAVPSIIHRDIKSSNILIDATWTARVSDFGLSMMSPEPDRDHRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKYGEDGGIFGTFMSVVDFAVPRILAGELVKILDPRVGPPDVNEAEAVELVAYIALHCVNLEGKDRPTMTDIVNNLERALAI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03218 391 SUPERFAMILY Protein kinase-like (PK-like) 90 385 IPR011009 -
Viun1g03218 391 Coils Coil 382 391 - -
Viun1g03218 391 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 83 390 IPR044815 GO:0004674
Viun1g03218 391 Pfam Protein kinase domain 123 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03218 391 Gene3D Transferase(Phosphotransferase) domain 1 179 390 - -
Viun1g03218 391 ProSiteProfiles Protein kinase domain profile. 111 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03218 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Viun1g03218 391 Gene3D Phosphorylase Kinase; domain 1 73 178 - -
Viun1g03218 391 SMART serkin_6 111 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03218 Viun-Chr1 40040391 40041796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03218 99 389 Receptor kinase-like Gene Family AT3G55950 65.924 5.06e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun1g03218 Pkinase 5.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03218 - - vun:114193227 473.781