Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03216 ATGAAATCAGCCTGGCCTCGTCCCCACTCTCATCCTTCTCCGCCACCGCCGCCAACCATACTCTCCGACTCTGATTCCGACGCAGACGGCCTTCCCTCCGGCACGGAGACACACCGCCACTCCGACCTCTCCGACTCCATCTTCAAGCCATACCTCGAATTCTCCGGCCACTCCGGCGCCGACCTATCGAAGATCCAATCATTCCTGACGTCATCCTCCGCCGGTGCTCTCTCGTGCCTCATCTGCCTCGAACGGATCAAACCCTCGGACCCCACTTGGTCATGCTCCTCCCTCTGCTTTGCCGTCTTCCACCTCATCTGCATCCAGAGCTGGGCCCGCCAGGCATCGGACCTTGCCGCCGCACGCGCTGCCACTCGTCTCCCCATCTCCGCCGCCACAGCCTCCGATACCGCCCTCTGGAACTGCCCCAAATGCAGATCGGAGTACCCCAAATCTCTCATTCCCAAAATGTATCTCTGCTTCTGCGGGAAGGTGGAGAACCCTCCCAACGATCCGTGGGTTTTGCCACACTCTTGCGGTGAGGTTTGCGGAAGACCGTTGAAACACAATTGCGGGCACCATTGCTTGTTACTCTGCCATCCCGGGCCGTGCCCCTCTTGCCCCAAACTCGTTAAAGTTCGATGCTTTTGTGGGTGCATTGAAGATGTTCGACGATGTGGATTCAAGGAATTTTCATGTAATAATTCGTGTTCCAGGGTTTTGGATTGTGGGGTTCACCGTTGCACCGAGGTTTGCCACCGTGGCACTTGCCCTCCTTGCTGGACCCGTGGCGTGTATGGCTGCCAGTGTGGGAAGGTGAAAGAGGAGAAGGAGTGTTGTGATCGTGTTTTTCAGTGTGATCATCCGTGTGAGAAGAGGCTTAGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGTCATTCAGGTGAGTGTGGTGAGTGTCCCCTTAAGGGGAAGAGAACATGTCCTTGTGGGAAAAGGGTTTATGAAGGAATGCCTTGTGATGCTTCTGTACAGCTTTGTGGAGCTACCTGTGATAAGATGTTGCCCTGTGGCTACCACAGGTGCCCAGAGCGATGCCACCGTGGACAGTGCGTTGAGACTTGTAGGGTTGTTGTGAAGAAGTCCTGTCGATGCGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAGGATGCGTGACTGTGGTCGGCATGCTTGCAAACGGCGCTGCTGTGATGGGGATTGCCCTCCTTGCTCAGAGGTATGCGGAAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGAGGTCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCATGTGCGTGTGGAGAGACACGATTTGAGGTTCCTTGTGGTACGGAAATGGACCAAAAACCTCCTAGATGTCCCAAACGATGTCCTATACCTCCTTTATGTCGGCATGCGTCAAATTGCAAGCCACATAAATGCCATTATGGAGCCTGCCATCCTTGTCGGCTACCTTGTGCCAATGAGTACCAATGTGGCCATGCATGCAAATTAAGGTGTCATGGTCCTAAGCCTCCTCCTAATCCAGAATTTACTCTGAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAGGTGTTCCTGGCACTCCATGCCCTCCTTGCCCTGAACTTGTGTGGAGATCATGTGTTGGACAACACATTGGAGCTGACAGAATGATGGTTTGCTCTGATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGGCAATCATTATTGTACAAAAACCTGCCATGCCTTGGATAACCAATTACGAGGAAGTGAACCATGTGAAGATTGTTATCTTTCTTGCCAAAAGGAAAGAGAGCCTGCATGTCCACACCATTGCCCTCGGTCATGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATTAAGCGGTCATGTCACTGCGGTGCAATGGTTCATGTGTTTGAGTGTATATATTACAATAGCTTATCTGCAAAGGATCAAGAGACCGTCCGTTCATGTGGTGGGCCATGTCATAGAAAGTTGCCAAATTGTACGCATCTATGCCCAGAGACTTGCCATCCTGGTGAGTGCACAAATGCAGAGAAATGCTGTAAAAAGGTCACAGTTCGCTGCAAATGTCATACACTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCAGCGTATCATGTTATGGGTTGCCATCCAAGGGATACACCAAAAAATCAATTTGGAATTGGACTAATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAGCTACAATTGCGTAAACCTAGGGTTACCGAGGTACAAGATCAAGATGCAGATAAATCAGTTCGAAAGCGAAGAAAAAGGAGGGAACGGGTTCTTGAATCCAAGGAAACATCAAAACTTCAAAAAATAATTTCCGGAGCGAAGCGGCTTCTTCTTTTTGTATTTATTTTGATCATACTTGTTGCTGCTACATCTTATGGGTACAATGGACTTTTATGGCTCTCTGATTGGATGAATGAAGTGGATGATCGAAGACAAAGATATTCTCGAATCAAATGA 2613 0.4922 MKSAWPRPHSHPSPPPPPTILSDSDSDADGLPSGTETHRHSDLSDSIFKPYLEFSGHSGADLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLICIQSWARQASDLAAARAATRLPISAATASDTALWNCPKCRSEYPKSLIPKMYLCFCGKVENPPNDPWVLPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGCIEDVRRCGFKEFSCNNSCSRVLDCGVHRCTEVCHRGTCPPCWTRGVYGCQCGKVKEEKECCDRVFQCDHPCEKRLSCGKHVCERGCHSGECGECPLKGKRTCPCGKRVYEGMPCDASVQLCGATCDKMLPCGYHRCPERCHRGQCVETCRVVVKKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEVCGRRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETRFEVPCGTEMDQKPPRCPKRCPIPPLCRHASNCKPHKCHYGACHPCRLPCANEYQCGHACKLRCHGPKPPPNPEFTLKPKKKKIIQQSEGVPGTPCPPCPELVWRSCVGQHIGADRMMVCSDKSQFSCENLCGNPLPCGNHYCTKTCHALDNQLRGSEPCEDCYLSCQKEREPACPHHCPRSCHPGDCPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKDQETVRSCGGPCHRKLPNCTHLCPETCHPGECTNAEKCCKKVTVRCKCHTLKKEWVCQDVQAAYHVMGCHPRDTPKNQFGIGLIPCNSDCKSKVQVVESELQLRKPRVTEVQDQDADKSVRKRRKRRERVLESKETSKLQKIISGAKRLLLFVFILIILVAATSYGYNGLLWLSDWMNEVDDRRQRYSRIK 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03216 870 CDD NF-X1-zinc-finger 179 227 - -
Viun1g03216 870 CDD NF-X1-zinc-finger 286 333 - -
Viun1g03216 870 MobiDBLite consensus disorder prediction 1 42 - -
Viun1g03216 870 SUPERFAMILY RING/U-box 72 151 - -
Viun1g03216 870 CDD NF-X1-zinc-finger 340 389 - -
Viun1g03216 870 CDD NF-X1-zinc-finger 233 281 - -
Viun1g03216 870 CDD NF-X1-zinc-finger 420 468 - -
Viun1g03216 870 Pfam NF-X1 type zinc finger 296 314 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 Pfam NF-X1 type zinc finger 637 652 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 Pfam NF-X1 type zinc finger 598 608 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 Pfam NF-X1 type zinc finger 403 421 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 Pfam NF-X1 type zinc finger 350 369 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 Pfam NF-X1 type zinc finger 243 261 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 Pfam NF-X1 type zinc finger 191 208 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 Pfam NF-X1 type zinc finger 424 448 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 60 512 IPR034078 GO:0003700
Viun1g03216 870 CDD NF-X1-zinc-finger 393 441 - -
Viun1g03216 870 SMART znfxneu3 516 561 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 698 720 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 191 209 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 243 262 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 350 370 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 430 449 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 296 315 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 493 508 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 598 625 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 635 653 IPR000967 GO:0005634|GO:0008270
Viun1g03216 870 SMART znfxneu3 403 422 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03216 Viun-Chr1 40027378 40035311 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Viun1g03216 zf-NF-X1 0.0024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03216 K15683 - gmx:100799540 1673.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03216 1 40027378 40035311 Viun8g02337 8 33296058 33301449 ECH
Viun8g01791 8 28771294 28782553 Viun1g03216 1 40027378 40035311 ECH
Viun1g03216 1 40027378 40035311 Viun1g03216 1 40027378 40035311 ECH
Viun1g03216 1 40027378 40035311 Viun8g02337 8 33296058 33301449 PCT