Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03207 ATGAATACCAAGTACTATGATGTTGATGATATTATAATGGAAGAAGAGACTGTGTCAGTTATATTTCAGAAGGCTGCATCTGGAGTGGGAATAGATCCCAGTTCTGTAATGGACTTTATTGAAACTGGTTCAAAAGTTGAATTGCCCTTTTGGCTTGCTCATGAGTTACAGATGAGACAGGCAGTATCAGTCAACGTTCCCCCTTGTTTTGATAAAAAAACAAGGCTAGAGATCCAAGCTGATTCGGCCGGTGTGGATCTGAGGTCCAGATGTCCATTCTTTTATGAGTTTGGTTGCAAGATAGCACCCATAGTTGGCGACCGAACCATTGGGTTTCTGTTGTTGTCTGCTTTTAAGAGTAGGTACAAGGAAATTCTCACGAAGGCCCATTCTGTAGCATTTGCTGCTGGTTCCAAATTTTGGTCTATTCTGACAAAAGAAGAGATCAACTTGTATGAGACAGCTCAATCCGAAATGGCATCCTTCAAGAAGTGGCGAATGGGAGGGCCCAGATTTCAGATAGCTTCTGTTCTGGGAAAAAAGAGAAAATCCGCTGAATAG 561 0.4207 MNTKYYDVDDIIMEEETVSVIFQKAASGVGIDPSSVMDFIETGSKVELPFWLAHELQMRQAVSVNVPPCFDKKTRLEIQADSAGVDLRSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKSRYKEILTKAHSVAFAAGSKFWSILTKEEINLYETAQSEMASFKKWRMGGPRFQIASVLGKKRKSAE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03207 186 SUPERFAMILY PriA/YqbF domain 3 67 - -
Viun1g03207 186 SUPERFAMILY GINS helical bundle-like 66 167 IPR036224 -
Viun1g03207 186 CDD GINS_B_Psf3 5 67 - -
Viun1g03207 186 PANTHER UNCHARACTERIZED 1 184 IPR010492 -
Viun1g03207 186 CDD GINS_A_psf3 62 168 - -
Viun1g03207 186 Gene3D - 1 168 IPR038437 -
Viun1g03207 186 Pfam GINS complex protein 46 149 IPR021151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03207 Viun-Chr1 39990554 39994509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03207 4 185 Core DNA Replication Machinery Family AT3G55490 66.484 7.65e-94 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03207 K10734 - gmx:100799874 334.339