Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03199 ATGGCCGCCATCGCCGCCACCACATCATACTTCTTCGGCACCAATCTCTACAGCCCGACAACCTTAAACACCGGAAGGTTCCACGCGTTCTTCAACTTCGGCACCAAGAAGGCGCCGCCGCCGCCGCCGCCGAAGAAAAAGGAAGTGAAAGTGAAACCCTCCTCCGGCGGGCGCCAGCTATGGTTCCCGAATGCGGAGGCGCCGGAGTGGCTCGACGGAAGCATGATCGGCGACCGCGGGTTCGATCCGTTCGGGTTCTCAAAGCCCGCGGAGTATCTGCAGTTTGACCTGGACTCGCTGGATCAGAACCTCGCTAAGAACGTTGCCGGCGAAGTGATCGGAACAAGGGTGGAGGTCGCAGAGGTCAAGCCGACGCCGTTTCAGCCCTACACGGAGGTTTTCGGGATTCAGAGGTTCCGCGAGTGCGAAGTCATTCACGGAAGGTGGGCAATGCTGGGTGCTCTCGGTGCTTTGGCCGTTGAGGCTCTCACCGGAGTCGCATGGCAAGACGCCGGAAAGGTAGAGCTGGTGGAAGGATCATCTTACCTGGGACTTCCACTTCCGTTTTCATTGACGACACTGATATGGATCGAGGTGATAGTGATAGGATACATAGAGTTTCAGAGAAACGCAGAACTTGACCCAGAGAAAAGGTTGTACCCAGGAGGAAAATTCTTCGATCCTCTGGGTTTGGCGAACGACCCTGAAGAAAAAGCCAGACTTCAACTTGCAGAGATCAAGCATTCGCGCTTGGCCATGCTCGTCTTCCTCATCTTTGCCATTCAAGCTGCTGTCACAGGAAAAGGTCCTATCAGTTTTATTGCTGCCTTCAACAAGTGA 840 0.5512 MAAIAATTSYFFGTNLYSPTTLNTGRFHAFFNFGTKKAPPPPPPKKKEVKVKPSSGGRQLWFPNAEAPEWLDGSMIGDRGFDPFGFSKPAEYLQFDLDSLDQNLAKNVAGEVIGTRVEVAEVKPTPFQPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVIVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKARLQLAEIKHSRLAMLVFLIFAIQAAVTGKGPISFIAAFNK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03199 279 MobiDBLite consensus disorder prediction 34 55 - -
Viun1g03199 279 Gene3D Chlorophyll a/b binding protein domain 59 279 - -
Viun1g03199 279 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 37 276 IPR001344 GO:0009765|GO:0016020
Viun1g03199 279 Pfam Chlorophyll A-B binding protein 67 263 IPR022796 -
Viun1g03199 279 SUPERFAMILY Chlorophyll a-b binding protein 58 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03199 Viun-Chr1 39912958 39914741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03199 12 272 Chloroplast and Mitochondria Gene Families AT3G08940 71.648 9.16e-136 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03199 K08915 - gmx:100820335 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03199 1 39912958 39914741 Viun1g03199 1 39912958 39914741 ECH
Viun1g03199 1 39912958 39914741 Viun8g02325 8 33254364 33257219 ECH
Viun1g03199 1 39912958 39914741 Viun8g02325 8 33254364 33257219 PCT