Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03186 ATGGAGGGAAAGGAGCAAGATGTTTCACTGGGAGCGAACAAATTCTCAGAGAGGCAACCCATTGGGACTGCGGCTCAGAGCCAAGACGACGGAAAGGACTACCAGGAGCCTCCGGCGGCTCCACTATTCGAACCCTCTGAACTCACTTCTTGGTCCTTCTACCGTGCCGGAATAGCCGAGTTTGTAGCTACTTTTCTTTTTCTCTACATAACCATCTTAACCGTCATGGGTGTCAATAGGTCCGCTTCCAAGTGCGCAACCGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGTATGATCTTCGCTCTCGTTTACTGCACCGCTGGAATCTCAGGGGGACACATAAACCCGGCTGTGACATTCGGACTCTTCTTGGCGAGGAAATTGTCGTTGACCAGGGCACTGTTCTACATGGTGATGCAGGTTCTGGGTGCTATTGTTGGTGCTGGTGTGGTCAAAGGTTTCGAGGGAAAAACCTTCTTCGGCCAACACAACGGTGGTGCCAACTTCGTTGCCCCTGGTTACACCAAAGGTGATGGACTCGGTGCTGAGATTGTTGGCACCTTCATTCTTGTCTACACCGTTTTCTCAGCCACTGATGCCAAGCGTAACGCTAGAGACTCACACGTTCCTATTTTGGCACCCTTGCCCATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACCATCCCTATCACTGGCACCGGTATCAACCCTGCACGAAGTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCACTGGATTTTCTGGGTTGGACCCTTCGTTGGAGCCGCTCTTGCGGCTCTGTACCACCAAGTCGTAATCAGAGCCATTCCCTTCAAATCCAACTGA 870 0.5218 MEGKEQDVSLGANKFSERQPIGTAAQSQDDGKDYQEPPAAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSASKCATVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAIVGAGVVKGFEGKTFFGQHNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFVGAALAALYHQVVIRAIPFKSN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03186 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Viun1g03186 289 FunFam Probable aquaporin PIP1-2 40 289 - -
Viun1g03186 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 MobiDBLite consensus disorder prediction 1 38 - -
Viun1g03186 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Viun1g03186 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun1g03186 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Viun1g03186 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 285 IPR034294 -
Viun1g03186 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03186 Viun-Chr1 39837694 39839185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03186 1 289 Major Intrinsic Protein MIP AT4G23400 83.737 9.96e-170 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03186 K09872 - gmx:100791447 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03186 1 39837694 39839185 Viun1g03186 1 39837694 39839185 ECH
Viun1g03186 1 39837694 39839185 Viun8g02294 8 32980279 32981844 PCT