Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03181 ATGTGTTCTTCTGATTCTGCTCTGTGTGAAGAAGTCACTGTCCTCTCAAAATGCTCCATAGTCCCTCACCAAAACTCCACTCTCGGAGACCTCAAACTCTCCATCTCAGACCTTAACATGTTTTTGGCTCACTACATCCAAAAGGGTTGTCTCTTCACCACCCCATCTCTCCCCTCTCACACTCTTATCCCTCACCTCACCAACGCGCTTTCTCGCACGCTCTCAATTTTCCCTCCATTAGCTGGCCGATTCAAAACTCATGCCGACGGCCACGTCTACATCGCATGCAACGACGCCGGCGTCGATTTCATCCACGCCACCGCCAACAATCTCTCTGTCACCGACCTCCTGTCGCCGTCGGATGTCCACCCGGCCTTTAAGAAATTCTTCCCTTTCCACCACAAAATCAGTTACACCGCCCATTCCTCCCCCATCATGGCCATTCAGGTCACTGAACTCACTGACGGTATTTTCATCGGTTGCGCCGTCTGCCATGCTGTTACCGATGGTTCCTCCTTTTGGAACTTCTTCAACATCTTTTCTGCAGTTTCTCGAGAAGGACTCATATCTCCCTCTAGGCTCCCGGAGTTTCACCGGGAATCAATCCTCATGTCGAAAGTCGTTCTCCGAATGCCCCAAGAACTCAAGGTCACCTTCGATGTTGACGCGCCCTTTCGCGAGAGAATCTTCAGTTTCAGCCGTGAATCGATTCAGAAGTTGAAAGGCTCAGTGAACAAGAGTAGGAAAATGTTTGGAGCAGGAAAAGAGGTGGTGGATGTTGAGTTAATGGCGAAGCTGAGCAATGACACAGAATTGAAAAAGGTGACAGAGGGCGAAACGACAGAGATTTCTTCGTTTCAGGCCTTGTGCGCGCTGATGTGGCGTTGCGTGACTAGAGCAAGGAATTTAGAGAAGGGTAAAACGACGACGCTCCGAATGGCAGTTAATGTTCGGCAACGTTCGGAGCCTAAATTGGGGGATTGTTACTTCGGGAATGCGATTCAAAGCATCGTGACGGTTGCAGCAGTTGGTGACGTCGTGTCCATGGACCTTGGCTGGTGTGCGGAACAGGTGCACAAGAGCGTGAAGGCGTTCAGTAGTGATACGGTGCGTCGTAACGTGGAGAATTGGGAGCGTGAGCCAAAGTGCTTCGAGTTAGGGAACCATGACGGTGCCACCGTGCAGATGGGAAGCTCGCCAAGATTTCCGATGTACGACAACGATTTCGGGTGGGGACGACCATTGGCCATGCGAAGTGGTGGAGCTAACAAGTTCGATGGAAAATTGTCGGCGTTTCCCGGGAGATATGGCGGTGGCAGCACCGATTTGGAAGTGGTTTTGGCGCCGGACACGATGGCGCGTCTGGAGTCTGATCCTGAGTTCATGATTTACTTGTGTGGAGAATAG 1407 0.5139 MCSSDSALCEEVTVLSKCSIVPHQNSTLGDLKLSISDLNMFLAHYIQKGCLFTTPSLPSHTLIPHLTNALSRTLSIFPPLAGRFKTHADGHVYIACNDAGVDFIHATANNLSVTDLLSPSDVHPAFKKFFPFHHKISYTAHSSPIMAIQVTELTDGIFIGCAVCHAVTDGSSFWNFFNIFSAVSREGLISPSRLPEFHRESILMSKVVLRMPQELKVTFDVDAPFRERIFSFSRESIQKLKGSVNKSRKMFGAGKEVVDVELMAKLSNDTELKKVTEGETTEISSFQALCALMWRCVTRARNLEKGKTTTLRMAVNVRQRSEPKLGDCYFGNAIQSIVTVAAVGDVVSMDLGWCAEQVHKSVKAFSSDTVRRNVENWEREPKCFELGNHDGATVQMGSSPRFPMYDNDFGWGRPLAMRSGGANKFDGKLSAFPGRYGGGSTDLEVVLAPDTMARLESDPEFMIYLCGE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03181 468 Pfam Transferase family 11 462 - -
Viun1g03181 468 Gene3D - 215 457 IPR023213 -
Viun1g03181 468 Gene3D - 12 214 IPR023213 -
Viun1g03181 468 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 14 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03181 Viun-Chr1 39815876 39817812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03181 36 456 Monolignol Biosynthesis Gene Families AT5G48930 27.586 1.91e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03181 - - gmx:100799704 705.671