Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03180 ATGTCTTCTCCTTGTGATTCAGTCACTGTCATCTCAAAATGCAAAGTTGTCCCTCACAAAAACTCTACTCTGGGAGATCTGAAACTCTCTATCTCAGACCTTAACATGCTCTTATGTCACTACATCCAAAAGGGGTGTCTCTTCACCACCCCATCTCTACCGTCACAACCTCTCATCCCTCATCTCACCAAAGCACTATCTCACACCCTCTCCCTTTTTCCTCCCTTTGCAGGTCGCCTCAAAACTGATGTTGACGGCTATGTCTACATCACATGCAACGACGCTGGCGTCGATTTCATCCACGCCACCGCCACTGATGTCTCCGTCGCCGACCTCCTGTCATCCTCCGATGTCCATCCAATCGTCAAACACCTCTTCCCATTCCACCACAAAATTAGTTACACGGCACATTCCTCCCCCATCATGGCCTTTCAGGTCACCGAGCTTGCTGACGGTGTTTTTATAGGTTGTGCTGTCTGTCACGCCGTCACCGACGGTGCTTCCTTCTGGAACTTCTTTAACACTTTCGCAGCAAATTCTCGAGGAGAAACCGCTTGTCTCTCCAGGCTCCCGGATTTTCGTCGGGATTCCATCCTCACCTCTAAGGTCGTGCTTCAACTTCCGAAAGAAATAAAGGCCACCTTCAATGTTGAGGCGCCATTTCGCGAGAAAATCTTCAGTTTCAGCCGTGAATCAGTTCAGAAGCTGAAAGCCTTAGTGAACAAACCTCCGATAATGTTTACGCCGGAGAGCGTTGATGTCGCGGATGAGATGATGGCGAAGCTGAACACGGACACACAACTGAAAACAGCTAAAGAAGGTGCAAGGGTTGAAACGACGGAGATTTCTTCATTCCAATCGTTGTGCGCATTGATGTGGAAATGCGTGACGAGGGCGAGGAATATGAAGAAGTCTAAAGTGACGTCGTTTCGAACTGCCGCTAATATTCGGCAGCGCATGAAGCCCAAGTTGGCTGATTTCTACTTCGGGAATGCGCTTCAGAGCATTACCACGTGTGCAACAGTGGGTGATGTGGTGTTGAAGGACCTTCAATGGTGTGCAGAGCAACTGAGTAGGAGCGTGAAGGCGTTTGATAGCGCTACGGTGCAGCGTAATGTGGAGAATTGGGAGCGTGAGCCGAAGTGCTACGAGTTAGGAAACCATGACGGCGCCACTGTGCAGATGGGAAGCTCGCCAAGATTTCCGATGTATGACAACGATTTTGGATGGGGGAGGCCCATAACAGTGCGGAGCGGCGGAGCAAACAAGTTTGACGGTAAAATGTCGGCGTTTCCTGGACGAAATGGCGGTGGCAGCGTCGACGTGGAGGTGGTTTTGGCCCCTGAAACAATGGCGCAACTCGAGTCCGATCCTGAATTCTTGCTTTACGTGTCTTCTCAGTGCGTAGGGACACGTGTCTGA 1422 0.5049 MSSPCDSVTVISKCKVVPHKNSTLGDLKLSISDLNMLLCHYIQKGCLFTTPSLPSQPLIPHLTKALSHTLSLFPPFAGRLKTDVDGYVYITCNDAGVDFIHATATDVSVADLLSSSDVHPIVKHLFPFHHKISYTAHSSPIMAFQVTELADGVFIGCAVCHAVTDGASFWNFFNTFAANSRGETACLSRLPDFRRDSILTSKVVLQLPKEIKATFNVEAPFREKIFSFSRESVQKLKALVNKPPIMFTPESVDVADEMMAKLNTDTQLKTAKEGARVETTEISSFQSLCALMWKCVTRARNMKKSKVTSFRTAANIRQRMKPKLADFYFGNALQSITTCATVGDVVLKDLQWCAEQLSRSVKAFDSATVQRNVENWEREPKCYELGNHDGATVQMGSSPRFPMYDNDFGWGRPITVRSGGANKFDGKMSAFPGRNGGGSVDVEVVLAPETMAQLESDPEFLLYVSSQCVGTRV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03180 473 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 461 - -
Viun1g03180 473 Gene3D - 212 456 IPR023213 -
Viun1g03180 473 Gene3D - 7 211 IPR023213 -
Viun1g03180 473 Pfam Transferase family 7 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03180 Viun-Chr1 39805937 39807808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03180 32 455 Monolignol Biosynthesis Gene Families AT5G48930 27.982 1.22e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03180 - - vum:124828482 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03180 1 39805937 39807808 Viun8g02292 8 32961941 32963773 PCT