Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03169 ATGCTCCCGGGAAGAAGTGTCTGTGATGTGATCAAACAGTACAGGGAATTGGAAGAAGATGTTTGTGAAATAGAAGCAGGGAGGGTTCCAATTCCTGGATATCTTACCTCTTCTTTCTCATTGGAAATGGCTGAGAACCAATGTTATGATGCCTGCAGAAAGAAGCCTGCTACTGTCAAGACTTCTGATCAGGAGAGGAAAAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTCTAAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGGAAATTTGTGATCACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAGAGGAGGCCTAGTATCCATGACATCACCATTGTTAATCTTACATCAGACCAAGAGAAGCTCAATGAATCTCACATTCCCTCTCAGAAACTGAAGCTGAATAGCATGTCAAAATTACAACTTGAATGGATAAATCGCCACAACAATATTGGTTCACTCATGGCTTTCAATCCAAATTATGATACGTTGATGTCACCTTCATCTGCTCAGGATTTCTATGAATGCGCCTTTCATGAGACTTATGCCAACCTTAAAAATCCAGGTTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 684 0.4108 MLPGRSVCDVIKQYRELEEDVCEIEAGRVPIPGYLTSSFSLEMAENQCYDACRKKPATVKTSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTSDQEKLNESHIPSQKLKLNSMSKLQLEWINRHNNIGSLMAFNPNYDTLMSPSSAQDFYECAFHETYANLKNPGFNKEAIFGIHAL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03169 227 Gene3D - 70 121 - -
Viun1g03169 227 SMART sant 68 118 IPR001005 -
Viun1g03169 227 FunFam transcription factor MYB1R1 70 121 - -
Viun1g03169 227 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Viun1g03169 227 ProSiteProfiles SANT domain profile. 72 120 IPR017884 -
Viun1g03169 227 ProSiteProfiles Myb-like domain profile. 64 116 IPR001005 -
Viun1g03169 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 120 IPR017930 -
Viun1g03169 227 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 119 IPR006447 GO:0003677
Viun1g03169 227 Pfam Myb-like DNA-binding domain 71 115 IPR001005 -
Viun1g03169 227 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 179 IPR043363 -
Viun1g03169 227 CDD SANT 71 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03169 Viun-Chr1 39742626 39744404 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun1g03169 Myb_DNA-binding 4.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03169 - - gmx:100783469 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03169 1 39742626 39744404 Viun8g02286 8 32876299 32878321 ECH
Viun1g03169 1 39742626 39744404 Viun1g03169 1 39742626 39744404 ECH
Viun5g01382 5 10560122 10562808 Viun1g03169 1 39742626 39744404 ECH
Viun1g03169 1 39742626 39744404 Viun5g01382 5 10560122 10562808 ECH
Viun1g03169 1 39742626 39744404 Viun8g02286 8 32876299 32878321 PCT