Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03168 ATGGAATTCGAGACCCCATATCCATCTTGTTTTATGTCGAATTCGAATTGGTTTGTTCAAGAGGGTCACTATACAGAATGGAGCAGAGAAGAGAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGACAAGGATACCCCAGACAGATGGCTGAGGGTTGCGGCCATGCTCCCGGGAAGAAGTGTCTGTGATGTGATCAAACAGTACAGGGAATTGGAAGAAGATGTTTGTGAAATAGAAGCAGGGAGGGTTCCAATTCCTGGATATCTTACCTCTTCTTTCTCATTGGAAATGGCTGAGAACCAATGTTATGATGCCTGCAGAAAGAAGCCTGCTACTGTCAAGACTTCTGATCAGGAGAGGAAAAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTCTAAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGGAAATTTGTGATCACAAAGACTCCCACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAGAGGAGGCCTAGTATCCATGACATCACCATTGTTAATCTTACATCAGACCAAGAGAAGCTCAATGAATCTCACATTCCCTCTCAGAAACTGAAGCTGAATAGCATGTCAAAATTACAACTTGAATGGATAAATCGCCACAACAATATTGGTTCACTCATGGCTTTCAATCCAAATTATGATACGTTGATGTCACCTTCATCTGCTCAGGATTTCTATGAATGCGCCTTTCATGAGACTTATGCCAACCTTAAAAATCCAGGTTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 849 0.417 MEFETPYPSCFMSNSNWFVQEGHYTEWSREENKKFESALAIYDKDTPDRWLRVAAMLPGRSVCDVIKQYRELEEDVCEIEAGRVPIPGYLTSSFSLEMAENQCYDACRKKPATVKTSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTSDQEKLNESHIPSQKLKLNSMSKLQLEWINRHNNIGSLMAFNPNYDTLMSPSSAQDFYECAFHETYANLKNPGFNKEAIFGIHAL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03168 282 CDD SANT 26 72 IPR001005 -
Viun1g03168 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Viun1g03168 282 SMART sant 23 75 IPR001005 -
Viun1g03168 282 SMART sant 123 173 IPR001005 -
Viun1g03168 282 SUPERFAMILY Homeodomain-like 120 175 IPR009057 -
Viun1g03168 282 Gene3D - 20 86 - -
Viun1g03168 282 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Viun1g03168 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Viun1g03168 282 Gene3D - 125 176 - -
Viun1g03168 282 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Viun1g03168 282 CDD SANT 126 170 IPR001005 -
Viun1g03168 282 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Viun1g03168 282 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Viun1g03168 282 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 234 IPR043363 -
Viun1g03168 282 FunFam Transcription factor SRM1 19 86 - -
Viun1g03168 282 FunFam transcription factor MYB1R1 125 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03168 Viun-Chr1 39742625 39744404 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g03168 Myb_DNA-binding 6.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03168 - - gmx:100783469 473.011