Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03138 ATGGGAGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAACTTGGGTCCAATAGAGGAAGGGCTGGTGGTCGTCATCTACAGCAACCTGAAGAGGAAAACATGGCTTGGCCAGCTCCATCTAGATCATGGGATGACCGCGCTAGATCTCGGAAAGAGAAAGAAGATTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACCGGGTATAGGTGGCGAACAGGAGCAAGAATCGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCTTCTGCTCATCCACCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGTATCGCATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATTTATGGCGATTGTTTAGGAGTCGGTCACAGCTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGTATCCGTATCACAAGTCCTGTTTCAAGGAATTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAGTATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGACTAGAGTCTCGGAATGAAAGATACTGCAGATTAGAAGATGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAAGCGACACTGGTGAATGTCAGCCTCTTTATCATGCAATCAGAGACTATTACGAAGGAATGAACATGAAAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTGCCAGAAACTAGGGGCTTGTGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCAAAGACGGCCAAGAATCGGAGGTCATAGATTGATAGGGATGAGATCTCAACCTCAAAAGCTGCTTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCATAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTCCTCTCCTACATGTGGCTTGAGGCAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCATCAGCTTCTTCCTCCTCCTCCTTCTCCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCCAATGAGGCTGTGAATAAATATGGTTTACGTTGCACTCTGGAGCATATTCGTTTGACTGGTAATTTCCCAGTGTGA 1491 0.442 MGDFVSSYSERKSGFMKWFGKIFKLGSNRGRAGGRHLQQPEEENMAWPAPSRSWDDRARSRKEKEDLDHAIALSLGENFKRPTGYRWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGIASHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKYPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRNERYCRLEDGRILCFECMESAISDTGECQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLLRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLEAEVMSCARTMPSTSSASSSSSFSSHSSKKGAKSHVEHKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGNFPV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03138 496 Pfam LIM domain 132 184 IPR001781 -
Viun1g03138 496 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 222 - -
Viun1g03138 496 PANTHER PROTEIN DA1-RELATED 2 18 495 IPR045218 -
Viun1g03138 496 ProSiteProfiles LIM domain profile. 130 189 IPR001781 -
Viun1g03138 496 Gene3D Cysteine Rich Protein 126 189 - -
Viun1g03138 496 MobiDBLite consensus disorder prediction 30 61 - -
Viun1g03138 496 Pfam Protein DA1 280 491 IPR022087 -
Viun1g03138 496 SMART lim_4 131 182 IPR001781 -
Viun1g03138 496 ProSitePatterns LIM zinc-binding domain signature. 132 165 IPR001781 -
Viun1g03138 496 CDD LIM_DA1 132 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03138 Viun-Chr1 39522245 39527265 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun1g03138 DA1-like 1.6e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03138 - - gmx:100798829 907.131