Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03137 ATGCCTCCTTCCTCAGATATCAACCATCTTTCTCACCCTTGTATATACGGAGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAACTTGGGTCCAATAGAGGAAGGGCTGGTGGTCGTCATCTACAGCAACCTGAAGAGGAAAACATGGCTTGGCCAGCTCCATCTAGATCATGGGATGACCGCGCTAGATCTCGGAAAGAGAAAGAAGATTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACCGGGTATAGGTGGCGAACAGGAGCAAGAATCGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCTTCTGCTCATCCACCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGTATCGCATCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATTTATGGCGATTGTTTAGGAGTCGGTCACAGCTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGTATCCGTATCACAAGTCCTGTTTCAAGGAATTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAGTATGATAATACAGCTCGGTGCTGTAGTTGTGAAAGACTAGAGTCTCGGAATGAAAGATACTGCAGATTAGAAGATGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAAGCGACACTGGTGAATGTCAGCCTCTTTATCATGCAATCAGAGACTATTACGAAGGAATGAACATGAAAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTGCCAGAAACTAGGGGCTTGTGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCAAAGACGGCCAAGAATCGGAGGTCATAGATTGATAGGGATGAGATCTCAACCTCAAAAGCTGCTTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCATAACCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTCCTCTCCTACATGTGGCTTGAGGCAGAGGTGATGTCATGTGCTAGAACCATGCCATCAACATCATCAGCTTCTTCCTCCTCCTCCTTCTCCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCCAATGAGGCTGTGAATAAATATGGTTTACGTTGCACTCTGGAGCATATTCGTTTGACTGGTAATTTCCCAGTGTGA 1536 0.4414 MPPSSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKLGSNRGRAGGRHLQQPEEENMAWPAPSRSWDDRARSRKEKEDLDHAIALSLGENFKRPTGYRWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGIASHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKYPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRNERYCRLEDGRILCFECMESAISDTGECQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLLRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLEAEVMSCARTMPSTSSASSSSSFSSHSSKKGAKSHVEHKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGNFPV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03137 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 237 - -
Viun1g03137 511 MobiDBLite consensus disorder prediction 45 76 - -
Viun1g03137 511 Pfam Protein DA1 295 506 IPR022087 -
Viun1g03137 511 ProSitePatterns LIM zinc-binding domain signature. 147 180 IPR001781 -
Viun1g03137 511 Gene3D Cysteine Rich Protein 141 204 - -
Viun1g03137 511 SMART lim_4 146 197 IPR001781 -
Viun1g03137 511 CDD LIM_DA1 147 198 - -
Viun1g03137 511 PANTHER PROTEIN DA1-RELATED 2 33 510 IPR045218 -
Viun1g03137 511 ProSiteProfiles LIM domain profile. 145 204 IPR001781 -
Viun1g03137 511 Pfam LIM domain 147 199 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03137 Viun-Chr1 39522001 39527265 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun1g03137 DA1-like 1.7e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03137 - - gmx:100798829 938.332