Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03133 ATGAAGGCACTGATTTTGGTTGGAGGTTTTGGAACGAGGTTGAGGCCATTGACACTCAGTGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTCAAGGCCATCGGAGTCAATGAAGTGGTACTAGCTATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGAATTTGAGGCAAAACTTGGCATCAAAATCACTTGTTCTCAAGAAACTGAACCACTGGGTACTGCAGGTCCCTTGGCTCTTGCGAGGGATAAGCTGGTAGGTGACTCTGGAGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTTAAAGATATGATTGCATTCCACAAAGCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCGTCAAAATACGGTGTGGTTGTAATGAACGAGACTACTGGACAGGTTGAGAAATTTGTAGAGAAACCAAAGTTGTTTGTTGGAAACAAAATCAATGCTGGAATATACCTATTGAACCCCTCAGTTTTGGATCGAATTCAACTGAGACCCACTTCTATCGAGAAAGAGGTGTTTCCAAACATCGCAGCAGCGAAAAAGCTATATGCAATGGTCCTGCCAGGGTTTTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGACACTTTACCTGGACTCGCTGAGGAAAAACTCTCCTTCTAAACTGGCCAGTGGTCCACATATTGTGGGAAATGTCATTGTGCACGAAACTGCTGATATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCAATCGGTCCTGGCTGTGTCGTTGAGTCAGGTGTCAGGCTTTCACGCTGCACAGTTATGCGAGGAGTTCGGATTAAAAAACACTCTTGCATATCTAGCAGCATCATTGGATGGCATTCCACCGTAGGGCAATGGGCCCGTGTGGAGAATATGACTATCCTTGGAGAAGACGTCCATGTTTGTGATGAAGTTTACAGCAATGGTGGTGTAGTTTTACCTCACAAGGAGATCAAGTCAAACATCCTGAAGCCAGAGATAGTCATGTAA 1086 0.4466 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLVGDSGEPFFVLNSDVISEYPLKDMIAFHKAHGGEASIMVTKVDEPSKYGVVVMNETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIQLRPTSIEKEVFPNIAAAKKLYAMVLPGFWMDIGQPRDYISGLTLYLDSLRKNSPSKLASGPHIVGNVIVHETADIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKKHSCISSSIIGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSNILKPEIVM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03133 361 Gene3D Hexapeptide repeat proteins 238 358 - -
Viun1g03133 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 231 IPR029044 -
Viun1g03133 361 FunFam mannose-1-phosphate guanyltransferase beta 1 232 - -
Viun1g03133 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058
Viun1g03133 361 Pfam Bacterial transferase hexapeptide (six repeats) 263 295 IPR001451 -
Viun1g03133 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Viun1g03133 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 360 - -
Viun1g03133 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03133 Viun-Chr1 39495919 39500048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03133 1 345 Eukaryotic Initiation Factors Gene Family AT4G18300 21.374 1.96e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03133 K00966 - gmx:100818016 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03133 1 39495919 39500048 Viun1g03133 1 39495919 39500048 ECH
Viun1g03133 1 39495919 39500048 Viun8g02225 8 32443298 32446446 PCT