Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03131 ATGGAGTTCATCAACAGAAACTTCCTTTTGGCAATTCTGCTGCTGATGCTATCACGCGCTCCGCACGTGTCCCCCGCAACACCGTGTCCCGCGTGCGGCAACACCACGGTGCCATTTCCCCTCAGCACCACCTCGACATGCGGCGATCCGCTGTACAAAATCCGGTGCAGCTCCGGCACACTCATCTTCGACACGCTGAACAACTCGTACCCGATTGAGTCCATCGACGCGAAAGCGCAGCGCCTTGTGATCCGGCCCGCGGCGCTCGTGCAGAACACGTGCGTCTCCACCGATAAGGTGCATCAGGGGATCCAGCTCAACAGCACCCTCCCCTTCAACATCACCAGTTCCAACACCATCGTCTACCTTAACTGTACCCTCACGCTCCTCCAGTCCCCCCTCAACTGCTCCGCCGCCAGCGCCTGCAACGCCTACATCAAAGCCACCGCCTCCGCCTCCGCCTGCCAGAGCGGGCCCCTCTGCTGCACCTATCGCACCGGCGGCTCCAGCAACTCCTATATGATTCGCGTAAGAGACTCTGGTTGCAGCGCCTACTCCAGCTTCGTTAACCTCAACACGGCTCAACCTGTGAGCCGCTGGCCCGAACCGGGTTTGGAGATTCAGTGGCTCTCGCCCAGAGAAACCGTTTGTGCATCCCAGGAGGATTGCGACTCTGCCACGTCGACTTGTGGGCCCGACGCCTCCTCTACGAGCGGGATCAGGAGGTGCTTCTGTCACGATGGGCTCGTGTGGAACCCCATCAAAGGGGTGTGCGCTAAAAAAATTACATGCCAGAACCCAGACGGTTGTGGGGACTCAACTAACAAAAAGATCATAATAGCAGGTTCAGTATGCGGTGCTGGGGCTGCAATCATCCTTGCCATAATAATCTTTCTATTCTACAAACGCCACAAGCGCATCAAAGAAGCACAAGCCCGGCTTGCCAAAGAGCGCGAAGGAATTCTGAATGCCAGTAATGGGGGAAGAGCGGCTAAACTTTTCAGTGGCAAAGAGATAAAGAAAGCCACAAACGACTTCTCCAATGACCGGCTTCTTGGTGTTGGGGGCTATGGTGAAGTTTACAAGGGCTTTCTTCAAGATGGTACTGCTGTGGCTGTCAAATGTGCCAAGCTTGGCAACCCCAAAGGCACTGATCAAGTCCTTAATGAGGTTCGCATATTATGCCAAGTTAACCACCGAAACCTTGTTGGTCTACTTGGTTGCTGCGTGGAACTGGAGCAGCCTATTTTGGTTTATGAGTTCATAGAAAATGGTACCGTTCTTGATCACTTGCAAGGTCAAATTCCCAAGGGCCGTGGTTTGCTTAGTTGGCCTCATCGCCTTGAAATTGCACGTCAGACTGCTGTGGGTCTTGCTTACCTTCACTTCATGGCTGTGCCTCCTATCTACCACAGAGATGTCAAGTCTAGCAACATTCTGCTAGATATCAATCTGAATGCCAAGGTTTCAGATTTTGGGTTGTCTAGGTTGGCCCAGACAGATATGAGTCATATCTCCACTTGTGCTCAGGGGACCCTTGGGTACCTCGATCCTGAGTATTATAGAAACTTCCAATTGACTGAGAAGAGTGATGTTTACAGTTTTGGAGTGGTGCTTCTTGAGCTTTTGACAGCTCAGAAAGCAATAGATTTTAACAGGGCACCAGATGATGTGAACTTGGCAATTTATGTTCATAGAATGATGGAGGAGGAACAGCTGATGGATGTCATTGATCCAGTGTTGAAGAATGTAGCCACCACTATAGAGCTAGAGACTATGAAGGCAGTGGCATTTCTGGCATTGGGCTGCTTGGAGGAAAAGAGACAGAATCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATCAGTATTGCCTCAGCAAAGGTAGTGGAGTAG 1905 0.515 MEFINRNFLLAILLLMLSRAPHVSPATPCPACGNTTVPFPLSTTSTCGDPLYKIRCSSGTLIFDTLNNSYPIESIDAKAQRLVIRPAALVQNTCVSTDKVHQGIQLNSTLPFNITSSNTIVYLNCTLTLLQSPLNCSAASACNAYIKATASASACQSGPLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLNTAQPVSRWPEPGLEIQWLSPRETVCASQEDCDSATSTCGPDASSTSGIRRCFCHDGLVWNPIKGVCAKKITCQNPDGCGDSTNKKIIIAGSVCGAGAAIILAIIIFLFYKRHKRIKEAQARLAKEREGILNASNGGRAAKLFSGKEIKKATNDFSNDRLLGVGGYGEVYKGFLQDGTAVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTVLDHLQGQIPKGRGLLSWPHRLEIARQTAVGLAYLHFMAVPPIYHRDVKSSNILLDINLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNFQLTEKSDVYSFGVVLLELLTAQKAIDFNRAPDDVNLAIYVHRMMEEEQLMDVIDPVLKNVATTIELETMKAVAFLALGCLEEKRQNRPSMKEVAEEIEYIISIASAKVVE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03131 634 FunFam Wall-associated receptor kinase-like 20 422 634 - -
Viun1g03131 634 SUPERFAMILY Protein kinase-like (PK-like) 330 621 IPR011009 -
Viun1g03131 634 CDD STKc_IRAK 352 622 - -
Viun1g03131 634 SMART serkin_6 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03131 634 Pfam Protein tyrosine and serine/threonine kinase 349 620 IPR001245 GO:0004672|GO:0006468
Viun1g03131 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Viun1g03131 634 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 624 IPR044652 GO:0004672
Viun1g03131 634 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Viun1g03131 634 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03131 634 Pfam Wall-associated receptor kinase galacturonan-binding 29 84 IPR025287 GO:0030247
Viun1g03131 634 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
Viun1g03131 634 Gene3D Phosphorylase Kinase; domain 1 307 421 - -
Viun1g03131 634 FunFam Wall-associated receptor kinase-like 20 308 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03131 Viun-Chr1 39486128 39489537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03131 18 634 Receptor kinase-like Gene Family AT5G02070 52.298 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun1g03131 PK_Tyr_Ser-Thr 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03131 - - gmx:100305415 1103.97