Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03120 ATGGCTGGGATTTGCTGTAGAGTTGTTGGAGAAGGTGACACCCCTACTCCTCTTGAACCAACATCTCGTCCTTCCACCCGCAGAGCCATGGATATCGTTCCCTTGAAGTACATCGCTGACATGGCCGTCTCCGACTCTTCCCGGAAGCGTCCCAAGCTCGATCTTAACGACGCTGATACTCAGCTTCAAACTGACCAGGAATCCTCCGGAACCGAGGTTATGAAGAAGGATTCCATGGAGAACGAAGAAGACGATGACGCTTCCGACACTAAATCCGGAACAGACGATGAATCCTCCGAAGATGAAGAGTGTCCCAAGTATGGCGTCACCTCTGTCTGCGGCAGGAGGAGGGACATGGAGGACTCTGTTTCCCTGCGCCCTTTCTTCTCGCCGGAAGGCTTCCACTACTTCGGCGTTTTTGACGGTCATGGTTGCTCTCATGTTGCCACTATGTGCAAGGAGCGGCTACACGAGATTCTGAACGAAGAGATTAACGAGGGGGATGACACTTTGCACTGGAGAGCATTGATGGAGAGCGGTTTCGCTCGCATGGATGAAGAGGTGTTCCGCCGGAGTCAGGCCAGCCAGACTTTCAACTGTAGGTGCGAGCTCCAGACTCCGCACTGCGACGCAGTTGGATCCACTGCTGTCATCGCCATCCTCACCCGGAACAAAATTGTCGTCTCCAACTGCGGCGACTCCCGTGCCGTCCTCTGCCGTAGCGGAGTTGCCATTCCTCTCTCTTCAGATCACAAGCCGGACCGTCCTGACGAATTGCTTCGAGTGGAATCCAAGGGAGGGCGTGTGATTTACTGGGACGGCCCAAGAGTGCTGGGTGTGTTGGCCATGTCTCGAGCCATAGGAGACTACTATCTGAAGCCGTTCGTGATTTCGGTGCCCGAGGTGACTGTGACGGATCGAAGTGATGACGACGAGTGTTTGATACTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAACGAAACTGCTTGTGGGGTGGTGAAGATGTGCCTGAAGTCGCAGACACCTCCAACGCCTCCAGGGTCTCCGGGTGGTTATGTGACGGCGGACGGCTCCGACCGTGCTTGCTCGGATGCTTCAATTCTGTTGACTAAGCTGGCTTTGGCAAGGCACAGTGCCGATAATGTGAGTGTGGTGGTCCTTGATTTGAGGAAGGAGCAAGAACAAACTCCCACTTCCAGCGTAAACGAATGA 1215 0.544 MAGICCRVVGEGDTPTPLEPTSRPSTRRAMDIVPLKYIADMAVSDSSRKRPKLDLNDADTQLQTDQESSGTEVMKKDSMENEEDDDASDTKSGTDDESSEDEECPKYGVTSVCGRRRDMEDSVSLRPFFSPEGFHYFGVFDGHGCSHVATMCKERLHEILNEEINEGDDTLHWRALMESGFARMDEEVFRRSQASQTFNCRCELQTPHCDAVGSTAVIAILTRNKIVVSNCGDSRAVLCRSGVAIPLSSDHKPDRPDELLRVESKGGRVIYWDGPRVLGVLAMSRAIGDYYLKPFVISVPEVTVTDRSDDDECLILASDGLWDVVSNETACGVVKMCLKSQTPPTPPGSPGGYVTADGSDRACSDASILLTKLALARHSADNVSVVVLDLRKEQEQTPTSSVNE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03120 404 Gene3D - 101 399 IPR036457 -
Viun1g03120 404 ProSiteProfiles PPM-type phosphatase domain profile. 106 390 IPR001932 -
Viun1g03120 404 MobiDBLite consensus disorder prediction 43 107 - -
Viun1g03120 404 PANTHER PROTEIN PHOSPHATASE 86 390 IPR015655 GO:0004722|GO:0006470
Viun1g03120 404 Pfam Protein phosphatase 2C 106 382 IPR001932 -
Viun1g03120 404 CDD PP2Cc 106 390 IPR001932 -
Viun1g03120 404 SUPERFAMILY PP2C-like 106 391 IPR036457 -
Viun1g03120 404 ProSitePatterns PPM-type phosphatase domain signature. 136 144 IPR000222 GO:0043169
Viun1g03120 404 SMART PP2C_4 94 388 IPR001932 -
Viun1g03120 404 MobiDBLite consensus disorder prediction 1 30 - -
Viun1g03120 404 MobiDBLite consensus disorder prediction 82 102 - -
Viun1g03120 404 FunFam Probable protein phosphatase 2C 9 100 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03120 Viun-Chr1 39429169 39431278 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03120 105 396 PP2C-type Phosphatase Gene Family AT1G07430 59.317 1.53e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03120 K14497 - gmx:100776356 612.838