Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03119 ATGGATATCGTTCCCTTGAAGTACATCGCTGACATGGCCGTCTCCGACTCTTCCCGGAAGCGTCCCAAGCTCGATCTTAACGACGCTGATACTCAGCTTCAAACTGACCAGGAATCCTCCGGAACCGAGGTTATGAAGAAGGATTCCATGGAGAACGAAGAAGACGATGACGCTTCCGACACTAAATCCGGAACAGACGATGAATCCTCCGAAGATGAAGAGTGTCCCAAGTATGGCGTCACCTCTGTCTGCGGCAGGAGGAGGGACATGGAGGACTCTGTTTCCCTGCGCCCTTTCTTCTCGCCGGAAGGCTTCCACTACTTCGGCGTTTTTGACGGTCATGGTTGCTCTCATGTTGCCACTATGTGCAAGGAGCGGCTACACGAGATTCTGAACGAAGAGATTAACGAGGGGGATGACACTTTGCACTGGAGAGCATTGATGGAGAGCGGTTTCGCTCGCATGGATGAAGAGGTGTTCCGCCGGAGTCAGGCCAGCCAGACTTTCAACTGTAGGTGCGAGCTCCAGACTCCGCACTGCGACGCAGTTGGATCCACTGCTGTCATCGCCATCCTCACCCGGAACAAAATTGTCGTCTCCAACTGCGGCGACTCCCGTGCCGTCCTCTGCCGTAGCGGAGTTGCCATTCCTCTCTCTTCAGATCACAAGCCGGACCGTCCTGACGAATTGCTTCGAGTGGAATCCAAGGGAGGGCGTGTGATTTACTGGGACGGCCCAAGAGTGCTGGGTGTGTTGGCCATGTCTCGAGCCATAGGAGACTACTATCTGAAGCCGTTCGTGATTTCGGTGCCCGAGGTGACTGTGACGGATCGAAGTGATGACGACGAGTGTTTGATACTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAACGAAACTGCTTGTGGGGTGGTGAAGATGTGCCTGAAGTCGCAGACACCTCCAACGCCTCCAGGGTCTCCGGGTGGTTATGTGACGGCGGACGGCTCCGACCGTGCTTGCTCGGATGCTTCAATTCTGTTGACTAAGCTGGCTTTGGCAAGGCACAGTGCCGATAATGTGAGTGTGGTGGTCCTTGATTTGAGGAAGGAGCAAGAACAAACTCCCACTTCCAGCGTAAACGAATGA 1128 0.5443 MDIVPLKYIADMAVSDSSRKRPKLDLNDADTQLQTDQESSGTEVMKKDSMENEEDDDASDTKSGTDDESSEDEECPKYGVTSVCGRRRDMEDSVSLRPFFSPEGFHYFGVFDGHGCSHVATMCKERLHEILNEEINEGDDTLHWRALMESGFARMDEEVFRRSQASQTFNCRCELQTPHCDAVGSTAVIAILTRNKIVVSNCGDSRAVLCRSGVAIPLSSDHKPDRPDELLRVESKGGRVIYWDGPRVLGVLAMSRAIGDYYLKPFVISVPEVTVTDRSDDDECLILASDGLWDVVSNETACGVVKMCLKSQTPPTPPGSPGGYVTADGSDRACSDASILLTKLALARHSADNVSVVVLDLRKEQEQTPTSSVNE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03119 375 SMART PP2C_4 65 359 IPR001932 -
Viun1g03119 375 ProSitePatterns PPM-type phosphatase domain signature. 107 115 IPR000222 GO:0043169
Viun1g03119 375 PANTHER PROTEIN PHOSPHATASE 57 361 IPR015655 GO:0004722|GO:0006470
Viun1g03119 375 MobiDBLite consensus disorder prediction 53 73 - -
Viun1g03119 375 MobiDBLite consensus disorder prediction 12 78 - -
Viun1g03119 375 CDD PP2Cc 77 361 IPR001932 -
Viun1g03119 375 ProSiteProfiles PPM-type phosphatase domain profile. 77 361 IPR001932 -
Viun1g03119 375 Pfam Protein phosphatase 2C 77 353 IPR001932 -
Viun1g03119 375 FunFam Probable protein phosphatase 2C 9 71 365 - -
Viun1g03119 375 SUPERFAMILY PP2C-like 77 362 IPR036457 -
Viun1g03119 375 Gene3D - 72 370 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03119 Viun-Chr1 39426330 39431278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03119 76 367 PP2C-type Phosphatase Gene Family AT1G07430 59.317 2.45e-133 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03119 K14497 - gmx:100776356 561.607