Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03107 ATGGAGGATTCTCAGTACTTGTTGTGGTTCAAGAGAAAACAAATCTTGAACTCACATATTCAGCAACCATTTGGAGCCCGCAACACCAACACCAACTCATCATGGGAGGAACGAGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCCTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTTCACAGGAGGGACAGGGCTAGGCTCAAACAAAGCCTTAGTCACCATAATGAATCTCTTCAACATCTTCACAACAAAAATGATTGTTCAGTTGCAGCAAGCAAAGCCTCATCTTCTAGGCCCTCAACTATATCCACTCAAGAAAATTGTTATCATCAGCCTACCATGTCTTCAATTAGCTGGGGGCATCACCACATGGGTTCTTCTGATTCAGAACCAAAAGGGTCTCCAGTGAATGGAAGGGAACAGTTTTTAAAAGGTTCGGGTTGCAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCAGTGTTTGGGCAAAAGTTACCAATTGAATCATATGGGGACGAAGCTATCAGTTATAAAAGATCAAAGACTTCTATGCTTCCTTTGCCTGTCTTCCACAAGCCATGTTCAAGTGATAGACACCTAACTTTTCATTCTGCAGAATTTGTACTTGGACTCAAGCCCGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 765 0.4275 MEDSQYLLWFKRKQILNSHIQQPFGARNTNTNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSHHNESLQHLHNKNDCSVAASKASSSRPSTISTQENCYHQPTMSSISWGHHHMGSSDSEPKGSPVNGREQFLKGSGCNDYVETSLSVGQSSVFGQKLPIESYGDEAISYKRSKTSMLPLPVFHKPCSSDRHLTFHSAEFVLGLKPGMEDLDLELRLGKPQKVI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03107 254 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Viun1g03107 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Viun1g03107 254 PANTHER OS07G0101800 PROTEIN 29 251 - -
Viun1g03107 254 MobiDBLite consensus disorder prediction 102 124 - -
Viun1g03107 254 Gene3D Classic Zinc Finger 55 129 - -
Viun1g03107 254 MobiDBLite consensus disorder prediction 139 159 - -
Viun1g03107 254 SMART c2h2final6 58 80 IPR013087 -
Viun1g03107 254 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Viun1g03107 254 MobiDBLite consensus disorder prediction 91 124 - -
Viun1g03107 254 Pfam C2H2-type zinc finger 58 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03107 Viun-Chr1 39354911 39356163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03107 20 90 C2H2 Transcription Factor Family AT2G37740 64.865 4.02e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g03107 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03107 - - gmx:102663477 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03107 1 39354911 39356163 Viun8g02218 8 32396142 32396885 PCT