Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03103 ATGGCGAATCGGTGGTGGGCTGGGAATGTGGGAATGATTAGAGAGCAAGAGTTGATGGAGAACAATAACAACGCCAATACTACTCCGACCAATAGCAGCAACAGCAACACGAACGCCAACACCAACACCACGGAGGAAGAGGTCAGCAGGGACAACGGAGATGACCAGAACCAGAACCTCGGAAGCCATGAAGGTTCGGAGCCCGGAAGCGGTGGTCGGAGGCCACGTGGCAGACCTCCCGGTTCCAAGAACAAGCCCAAGCCGCCGATTGTCATAACCAAAGAAAGCCCCAACGCGCTCCGAAGCCACGTGCTGGAAATCGCCAGCGGCAGTGACGTCGCAGAGAGCATCGCCGCCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGCAGCGGCATTGTCACCAACGTCACTCTCCGCCAACCCGCCGCCCCCGCGGGAGTCATCACCCTCCACGGAAGGTTCGAGATTCTCTCCCTCTCCGGCGCCTTTTTGCCCTCTCCTTCGCCCCCTGGCGCCACCGGACTCTCCGTCTATTTGGCCGGAGGGCAGGGGCAGGTCGTTGGCGGCACCGTTGCGGGTTCTTTGGTGGCCTCCGGGCCGGTGATGGTGATCGCCGCCACATTCGCCAATGCTACTTATGAGAGGCTGCCGCTGGAGGATGAACAAGGTGAAGAGGAAATGCAAGTGCAACAGCAACCGCCGCAGCAGCAGCAGCAACAACAACAATCTCAGGGTTTAGGTGAACAAGTTTCAATGGCCATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGTTTTGGGGAGCTGCTCCACCTCGTCCTCCACCTTCCTTCTGA 870 0.5862 MANRWWAGNVGMIREQELMENNNNANTTPTNSSNSNTNANTNTTEEEVSRDNGDDQNQNLGSHEGSEPGSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIASGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLSVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQPPQQQQQQQQSQGLGEQVSMAMYNLPPNLLHNGQNMPHDVFWGAAPPRPPPSF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03103 289 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Viun1g03103 289 MobiDBLite consensus disorder prediction 231 254 - -
Viun1g03103 289 MobiDBLite consensus disorder prediction 22 46 - -
Viun1g03103 289 MobiDBLite consensus disorder prediction 22 94 - -
Viun1g03103 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
Viun1g03103 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 280 IPR014476 GO:0003680
Viun1g03103 289 MobiDBLite consensus disorder prediction 224 254 - -
Viun1g03103 289 PIRSF ESCAROLA 11 288 IPR014476 GO:0003680
Viun1g03103 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Viun1g03103 289 Gene3D - 100 242 - -
Viun1g03103 289 FunFam AT-hook motif nuclear-localized protein 100 228 - -
Viun1g03103 289 CDD DUF296 101 212 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03103 Viun-Chr1 39336721 39339407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03103 1 289 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.063 2.19e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03103 - - gmx:102667174 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03103 1 39336721 39339407 Viun1g03103 1 39336721 39339407 ECH
Viun1g03103 1 39336721 39339407 Viun8g02214 8 32356032 32357705 PCT