Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03093 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGTTTTCCAGGATTTATACCGGAGAGGCGAGCATTGCGTGTTCATGCAGCTCGTCCTAGTAATTCTAATTCACTCACTTTTCTCGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCCCCAAATTTTCTGCTCTGGCTGGTGCTCGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACAGAACTGAGGTTGCATATGCCACCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCTCTTCTTGACCGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTAGATTCAGATAATGTTTCTACTGCACCTTCCATGACCGAGGAAGAGATTAATGCTCTTCCAGTTCACAAGTATAAGGTTGCTGGTCCCCAGAGTGGTGGATCATCAATGCAACCAGCATCATCATCCACTTCTGCTGAGAAGAAGCAAGACATTTCAGGGGCTGTTGGAAGCATGAAAGCCTCTGACGATGAACTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTCGGTGAAGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAGTTGCATCGATCCTTGGCTGCGCCAACAAGGGACATGTCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAATGATATCGCGGACATGGTTTGA 822 0.4586 MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVAGPQSGGSSMQPASSSTSAEKKQDISGAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03093 273 MobiDBLite consensus disorder prediction 173 201 - -
Viun1g03093 273 MobiDBLite consensus disorder prediction 176 196 - -
Viun1g03093 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Viun1g03093 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Viun1g03093 273 SUPERFAMILY RING/U-box 208 257 - -
Viun1g03093 273 SMART ring_2 213 253 IPR001841 -
Viun1g03093 273 PANTHER TARGET OF ERK KINASE MPK-1 1 260 - -
Viun1g03093 273 Pfam Ring finger domain 212 254 IPR001841 -
Viun1g03093 273 CDD RING-H2_PA-TM-RING 212 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03093 Viun-Chr1 39264410 39268299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03093 1 273 C3H Transcription Factor Family AT3G55530 78.261 1.72e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03093 K16283 - gmx:100777936 461.07