Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03091 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGTTTTCCAGGATTTATACCGGAGAGGCGAGCATTGCGTGTTCATGCAGCTCGTCCTAGTAATTCTAATTCACTCACTTTTCTCGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCCCCAAATTTTCTGCTCTGGCTGGTGCTCGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACAGAACTGAGGTTGCATATGCCACCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCTCTTCTTGACCGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTAGATTCAGATAATGTTTCTACTGCACCTTCCATGACCGAGGAAGAGATTAATGCTCTTCCAGTTCACAAGTATAAGGTTGCTGGTCCCCAGAGTGGTGGATCATCAATGCAACCAGCATCATCATCCACTTCTGCTGAGAAGCAAGACATTTCAGGGGCTGTTGGAAGCATGAAAGCCTCTGACGATGAACTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTCGGTGAAGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAGTTGCATCGATCCTTGGCTGCGCCAACAAGGGACATGTCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAATGATATCGCGGACATGGTTTGA 819 0.4591 MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVAGPQSGGSSMQPASSSTSAEKQDISGAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03091 272 MobiDBLite consensus disorder prediction 176 196 - -
Viun1g03091 272 CDD RING-H2_PA-TM-RING 211 253 - -
Viun1g03091 272 MobiDBLite consensus disorder prediction 173 200 - -
Viun1g03091 272 SUPERFAMILY RING/U-box 207 256 - -
Viun1g03091 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 258 IPR013083 -
Viun1g03091 272 SMART ring_2 212 252 IPR001841 -
Viun1g03091 272 Pfam Ring finger domain 211 253 IPR001841 -
Viun1g03091 272 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Viun1g03091 272 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03091 Viun-Chr1 39264184 39268145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03091 1 272 C3H Transcription Factor Family AT3G55530 78.182 1.83e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03091 K16283 - gmx:100777936 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03091 1 39264184 39268145 Viun1g03091 1 39264184 39268145 ECH