Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03090 ATGATATTGAACTCTCACCAGATGTCCCCAAATTTTCTGCTCTGGCTGGTGCTCGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACAGAACTGAGGTTGCATATGCCACCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCTCTTCTTGACCGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTAGATTCAGATAATGTTTCTACTGCACCTTCCATGACCGAGGAAGAGATTAATGCTCTTCCAGTTCACAAGTATAAGGTTGCTGGTCCCCAGAGTGGTGGATCATCAATGCAACCAGCATCATCATCCACTTCTGCTGAGAAGAAGCAAGACATTTCAGGGGCTGTTGGAAGCATGAAAGCCTCTGACGATGAACTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTCGGTGAAGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAGTTGCATCGATCCTTGGCTGCGCCAACAAGGGACATGTCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAATGATATCGCGGACATGGTTTGA 675 0.4711 MILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVAGPQSGGSSMQPASSSTSAEKKQDISGAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03090 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 210 IPR013083 -
Viun1g03090 224 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Viun1g03090 224 SMART ring_2 164 204 IPR001841 -
Viun1g03090 224 PANTHER TARGET OF ERK KINASE MPK-1 1 211 - -
Viun1g03090 224 SUPERFAMILY RING/U-box 159 208 - -
Viun1g03090 224 Pfam Ring finger domain 163 205 IPR001841 -
Viun1g03090 224 MobiDBLite consensus disorder prediction 124 152 - -
Viun1g03090 224 MobiDBLite consensus disorder prediction 127 147 - -
Viun1g03090 224 CDD RING-H2_PA-TM-RING 163 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03090 Viun-Chr1 39264184 39268292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03090 1 224 C3H Transcription Factor Family AT3G55530 78.319 3.88e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03090 K16283 - gmx:100777936 381.719