Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03086 ATGGTTTTCACTTTGAGCAACAGAGTGCTATGCTTCATCATCATCATCATCACTTTTACCAGTTTCTTGCAACTTGCAGAGCCTTCAAACACGAGGGAAGACACGTTGCTCCAAGGCCACCCCCTTGCAGCAACCGATCGTTTAATTTCGCCTTCATCTTTATACACACTGCGTTTCTTTCAGCTTGATGATGGGTCTGAGGCTAACACCAAATTCTACCTTGGCATATCAGCCAAGAAGTACTATTACTATGTTTGGCTTGCCAACAGGGACAATCCAATCTACGATGACCCCGGGGTTCTCACCATTGATCAATATGGCAACCTCAAAATTGTGTCAAGTACTACCACTATGATGCTGTATTCAGTTGAAGCAGAAAGTAACAAAAGTGTTAGAGGGTCTTTGCTGGATACAGGAAACTTTGTGCTTTATGAATTCAACTTAGATGGATCCGTGAAGAGGGTGTTATGGCAGAGCTTTGATTACCCCACAGATACAATGTTGCCAGGGATGAAGCTTGGGTATGACAAGCACAGTGGCCACAAATGGTCTCTAACAGCAAGGAGAAGTTACAAAACTCTTTGGTCAGGGTCTTTCTCTCTCAGCCTTGACCCCAAAACTAACCAATTGGTTAGTATATGGAGAGGGGACATTATTTGGAGCAGTGGAGAGTGGAGAAACGGAAGTTTTAGCAACCTGAAAGCATCATCACTTGACAGAGAGAAGTTAAACTTCAGTTTCTTTTCAAATGAAAGTGTGACCTACTTTGAATTTTCTTCAGTTTCTGGTTATCTCATCATAGAACCATTGGGTAAAATGAATGCTAGTGGTGTCTCTTACTCATGTGTTGACGGTGAGATTGTGCCCGGTTGTACAACGGTACAGCCTCCGAAATGTAGGAAAGATAGTGATTTGTACTTTCCAAGTTGGAATAGTTTTGGAGCAATGTCAAGAAAGGGATACGTATTTGATGAAAGAGAGAACTTGACCATTTCTGATTGTTGGATGAGGTGTTTGAAAAATTGCTCCTGTGAGGCTTACACTTACGCATTCAAGGATGCAACGGGCTGTGAAATATGGAGCAGAGACACATCACACTTTGTTGAGACTAGTTCCGGTGTTGGCCGCCTAGTTTTCTTCTTTCTCAGCGAAACCAAAACCAAAGGCAAGAAGAGGAGAATATGGATTGCTGGTACTGCAGCTGGAGTTCTTTTCCTCATAGTCTCATTCATTGCATCCTTTATCATGTTCTGGAGAAAACAAAAAGAAACAGTTGAAAATCGCAAGAAGCGAACAAATGTATTCTCTGACATCGGAGAAAATACTGAAATTTCTGATGCGTGCGATGAAGGAAGAGAACAATGGAATGAGAAGAGGACACGCAGTGATACACATAAATTCGACTTTGTAACCATTCTCCAAGCAACGGACAATTTCTCTTTCGCGAATAAGATCGGAGAGGGTGGCTTTGGGCCTGTTTACAAGGGGAAATTGGCAAATGGCCAAAAAATAGCTATAAAGAGACTTTCAAAAAGCTCCGGACAAGGATTGGTAGAGTTCAGAAATGAAGCTATGTTGATTGTGAAACTGCAGCACACTAACCTTGTCAGGCTTCTAGGATTTTGCATTGACAGAGAAGAAAGAATATTAGTCTATGAATACATGGCCAACAAAAGTTTGAATTTATACCTTTTTGATGCCAACAAAAGAACTGTGTTAGATTGGAAGAGAAGTGGTTATATGTCTCCAGAATATGCAATGAGTGGAGTTATCTCAACCAAAATTGACGTATACAGCTTTGGGGTATTACTCTTAGAGATTGTGACCGGAAAGAAAAATATTAGTGACGATTTTTCATTGAACCTAATAGGATATGCATGGCAATTATGGAATGAAGGGAAAGCTCTAAAGCTAATTGACACAATTGTGAATGGTTCAAGCAACCACATCCAAGTTATGCGATGCATTCATATAGGTCTGTTGTGCACTCAAGACAAAGCAAAGGATAGACCCACTATGCTTGAGGTTATTTCTTTTCTTTCAAATGAAAATGCTGAGTTACCTTCTCCTATACAACCACCACTTTATACCATCAAAGGTGCGAAGGAGGCAGAGCAACATAAATATTGCTCCAATAATGACATCACAATGTCAATCACATCTGGAAGATAA 2172 0.4065 MVFTLSNRVLCFIIIIITFTSFLQLAEPSNTREDTLLQGHPLAATDRLISPSSLYTLRFFQLDDGSEANTKFYLGISAKKYYYYVWLANRDNPIYDDPGVLTIDQYGNLKIVSSTTTMMLYSVEAESNKSVRGSLLDTGNFVLYEFNLDGSVKRVLWQSFDYPTDTMLPGMKLGYDKHSGHKWSLTARRSYKTLWSGSFSLSLDPKTNQLVSIWRGDIIWSSGEWRNGSFSNLKASSLDREKLNFSFFSNESVTYFEFSSVSGYLIIEPLGKMNASGVSYSCVDGEIVPGCTTVQPPKCRKDSDLYFPSWNSFGAMSRKGYVFDERENLTISDCWMRCLKNCSCEAYTYAFKDATGCEIWSRDTSHFVETSSGVGRLVFFFLSETKTKGKKRRIWIAGTAAGVLFLIVSFIASFIMFWRKQKETVENRKKRTNVFSDIGENTEISDACDEGREQWNEKRTRSDTHKFDFVTILQATDNFSFANKIGEGGFGPVYKGKLANGQKIAIKRLSKSSGQGLVEFRNEAMLIVKLQHTNLVRLLGFCIDREERILVYEYMANKSLNLYLFDANKRTVLDWKRSGYMSPEYAMSGVISTKIDVYSFGVLLLEIVTGKKNISDDFSLNLIGYAWQLWNEGKALKLIDTIVNGSSNHIQVMRCIHIGLLCTQDKAKDRPTMLEVISFLSNENAELPSPIQPPLYTIKGAKEAEQHKYCSNNDITMSITSGR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03086 723 Gene3D Transferase(Phosphotransferase) domain 1 557 689 - -
Viun1g03086 723 Gene3D Phosphorylase Kinase; domain 1 442 554 - -
Viun1g03086 723 Gene3D - 29 160 IPR036426 -
Viun1g03086 723 SMART blect_4 39 163 IPR001480 -
Viun1g03086 723 CDD B_lectin 48 163 IPR001480 -
Viun1g03086 723 ProSiteProfiles PAN/Apple domain profile. 299 383 IPR003609 -
Viun1g03086 723 Pfam PAN-like domain 327 363 IPR003609 -
Viun1g03086 723 PIRSF SRK 577 723 IPR024171 GO:0004674
Viun1g03086 723 PIRSF SRK 273 578 IPR024171 GO:0004674
Viun1g03086 723 PIRSF SRK 5 276 IPR024171 GO:0004674
Viun1g03086 723 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 226 IPR036426 -
Viun1g03086 723 SUPERFAMILY Protein kinase-like (PK-like) 463 698 IPR011009 -
Viun1g03086 723 SMART ntp_6 308 384 IPR003609 -
Viun1g03086 723 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 671 - -
Viun1g03086 723 Pfam Protein tyrosine and serine/threonine kinase 580 680 IPR001245 GO:0004672|GO:0006468
Viun1g03086 723 Pfam Protein tyrosine and serine/threonine kinase 480 569 IPR001245 GO:0004672|GO:0006468
Viun1g03086 723 ProSiteProfiles Bulb-type lectin domain profile. 33 156 IPR001480 -
Viun1g03086 723 Pfam D-mannose binding lectin 84 189 IPR001480 -
Viun1g03086 723 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 444 554 - -
Viun1g03086 723 ProSiteProfiles Protein kinase domain profile. 479 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03086 Viun-Chr1 39181986 39186316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03086 452 711 Receptor kinase-like Gene Family AT4G11480 37.160 5.89e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g03086 B_lectin 3.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03086 - - vum:124824926 1027.31