Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03084 ATGATGTTATATTCAGTTGAAGCAGAAAGTAACAAAAGTGTTAGAGGGTCTTTGCTGGATACAGGAAACTTTGTGCTTCATGAATTCAACTTAGATGGATCTGTGAAGAGGGTGTTATGGCAGAGCTTTGATTACCCCACAGACACAATTTTGCCAGGGATGAAGCTTGGGTATGACAAGCACAGTGGCCACAAGTGGTCTCTAACAGCAAGGAGAAGTTACAAAACTCTTTGGTCAGGGTCTTTCTCTCTTTCCGTTGACCCCAAAACTAACCAATTGGTTAGTAGATGGAGAGGGGACATTATTTGGACCAGCGGAGAGTGGAGAAATGGAAGTTTTAGCAACCTGAAATCTTCATCACGTGACAGAGAGAACTTCAACTTCAGTTTCTTTTCAAATGAAAGTGTGACCTACTATGAATTTTCTAAAGTTTCTGGTTTTCTGATCATGGAAGCATTGGGTAGAATGAATGCTAGTGGTGTGTCTTACTCGTGTGTTGACAGTGAGATTGTGGCTGGTTGTACAATGCCACAGCCTCCGAAATGTAGGGAAGATAGTGATTTGTACTTGCCAAGTTGGAATAGCTTTGGAGCAATGTCAAGAAAGGGATACGTATTTGATGAAGGAGAGAACTTGACCATTTCTGATTGCTGGATGAGGTGTTTGAAAAATTGCTCCTGTGAGGCTTACTCTTATGCATTCAAGGATGCAACTGGGTGTGAAATATGGAGCAGAAACACATCACACTTCGTTGAGACTAATTCCGGTGTTGGCCGTCCAATTTTCTTCTTTCTCAGCGAAACCACCAAACCCAAAGGCAAGAAGAGGAGAATATGGATTGCTGGTACTGCAGCTGGAGTTCTTTCCCTCATAGTCTCATTCATTGCATCCTTTATCATGTTCTGGAGAAAACAAAAAGAAACAGTTGAAAATCGTAAGAAGCGAACAAATGTATTCTCTGACATTGGAGAAAATACTGAAATTTCTGATGCATACGATGAAGGAAGAGAACAATGGAATGAGAAAAGGACACGCAGTGATACACATAAATTCGACTTTATAACCATTCTTCAGGCAACGGACAATTTCTCTCTCGCGAATAAGATTGGAGAGGGTGGCTTTGGACCTGTTTACAAGGGAAAATTGGCAAATGGTCAAGAAATAGCTATAAAGAGACTTTCAAAAAGCTCGGGACAAGGATTGGTAGAATTCAGAAATGAAGCTATGTTGATTGTGAAACTGCAACACACTAACCTTGTCAGGCTTCTAGGATTCTGCATTGATAGAGAAGAAAGGATATTAGTCTATGAATACATGGCCAACAAAAGTTTGAATTTATACCTTTTCGATGCCAACAAAAGAACTATATTAGATTGGAAGATAAGGTATAAAATTATTGAAGGAATTGCTCAAGGACTCGTGTATTTACATCAATATTCAAGATTAAAAGTGATACACCGAGATTTGAAGGCTAGTAATATTTTATTGGACAATGAGTTAAATCCAAAGATATCTGATTTTGGAATGGCTCGAATACTTAAATGGACACTATTAGAAGAAAAAACAAACAGAGTTGTTGGAACATAG 1587 0.39 MMLYSVEAESNKSVRGSLLDTGNFVLHEFNLDGSVKRVLWQSFDYPTDTILPGMKLGYDKHSGHKWSLTARRSYKTLWSGSFSLSVDPKTNQLVSRWRGDIIWTSGEWRNGSFSNLKSSSRDRENFNFSFFSNESVTYYEFSKVSGFLIMEALGRMNASGVSYSCVDSEIVAGCTMPQPPKCREDSDLYLPSWNSFGAMSRKGYVFDEGENLTISDCWMRCLKNCSCEAYSYAFKDATGCEIWSRNTSHFVETNSGVGRPIFFFLSETTKPKGKKRRIWIAGTAAGVLSLIVSFIASFIMFWRKQKETVENRKKRTNVFSDIGENTEISDAYDEGREQWNEKRTRSDTHKFDFITILQATDNFSLANKIGEGGFGPVYKGKLANGQEIAIKRLSKSSGQGLVEFRNEAMLIVKLQHTNLVRLLGFCIDREERILVYEYMANKSLNLYLFDANKRTILDWKIRYKIIEGIAQGLVYLHQYSRLKVIHRDLKASNILLDNELNPKISDFGMARILKWTLLEEKTNRVVGT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03084 528 ProSiteProfiles Protein kinase domain profile. 363 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03084 528 SMART serkin_6 363 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03084 528 Gene3D Transferase(Phosphotransferase) domain 1 439 528 - -
Viun1g03084 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 439 528 - -
Viun1g03084 528 ProSiteProfiles PAN/Apple domain profile. 182 266 IPR003609 -
Viun1g03084 528 SUPERFAMILY alpha-D-mannose-specific plant lectins 10 109 IPR036426 -
Viun1g03084 528 Pfam D-mannose binding lectin 8 72 IPR001480 -
Viun1g03084 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 327 438 - -
Viun1g03084 528 Pfam Protein kinase domain 365 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03084 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Viun1g03084 528 SUPERFAMILY Protein kinase-like (PK-like) 341 528 IPR011009 -
Viun1g03084 528 Pfam PAN-like domain 210 246 IPR003609 -
Viun1g03084 528 Gene3D Phosphorylase Kinase; domain 1 325 438 - -
Viun1g03084 528 SMART ntp_6 191 267 IPR003609 -
Viun1g03084 528 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03084 Viun-Chr1 39174824 39178536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03084 272 528 Receptor kinase-like Gene Family AT4G23190 50.195 1.47e-79 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g03084 Pkinase 6.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03084 - - gmx:100782230 858.596