Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03083 ATGGCTATCAGCCAAACTATACTAGGCTTCATCACTTTCACTTGTTTGATGCACATAACGAAACCTTCAAACTTGAACACTGACACGTTACTACAGGGTCATGAGTTCACAACAAGTGACCGTTTGATTTCACCTACAGGTTGGTATACAATGAGTTTCTTTCAGCGAGAAGGCTCTGCAGATTTCTACCTTGGAATTGGAAAATCAGCTGAAAATTCAACTGATCAGAATTTCTGGATAGCCAATAGAGACACGCCAATCCACGACCCTGCACCGTTTCTCACAATTGATGAATTTGGTAACTTGAAAATTATTTCCAACCGGGATATAAATTCCACTATCATGCTCTATTCTTCTGATGCTGGAAGAGAAGTTAACAATAATAACAGTACTACTTCTACTTCTACTACTACTACCTTCAACGCCATATTGCAAGATACCGGCAACCTTATGCTTCGTGAAATGAACCAAAATGGATCTTTGAAGCGGATATTGTGGCAAAGCTTTGATCACCTCTCACACGTTCTCATGATGGGGATGAAACTAGGGTTTGACAGAAAAACTGGTCAAAATTGGTCTATAACATCACGGAGAAGTGAAGAGACTTATTTGTCAGGGTCTTTCACCCTTGCCCTTGAGCCCACAACGAAGCAATTGGTGATATGGTGGAAAGGGAACATTTTGTGGAGTAGTGGGCAATGGAGCAATGGAAACTTTGCGAATCTAAAGTCCCAAGCTTACCAGAAGGACTTTGAATTTGATTACTACTCAGATGAAAATGAAACCTATGTGTCATATCTTGCTAGTTATATCTACATAGCACCTTCAGGTTCAGTATATGGCGGCGCTTCTGGTTCTTCTTTTTCATGCTTCAGTGATTACATTCTATCTGGTTGTTCAATGCCAAGTGTTCCCAGATGTAGAGATTATGATAGCTTGTATCGGGGTAGCTGGAATAGCTACGGAGTAATGTCAGGGAAGGGTTTCAAATTTGATGAAAGTGAGAACCTCACAAATTTTGATTGCTGGATGAAGTGCTTGAATAATTGCAGTTGTGAAGCCTACTCTTATGTTAACGATGATGAAACTGGGTGTGAGATATGGAGCAGAGACTCAGCAAACTTTGTAGCCACTACTAATTTGACAGGTGGAGGGCGTCAGATATACTTCCTTGTTCCCAGAAAAAATGGCAATACTAAGATATGGATCATAAGCACAATAGTTGGAACTCTCATACTAATCATCTTATGCTTCACATGCACTAAGTTGCAGAAAAAACTAAAACTGAAAGCCGAAGATCGCAAGAAGCGAACGAAGTTATTGTATGAAATCGGAGGAAATACTGCAATTTCCATTGCTTATAATGAAATAAAAGAACGGAAGAAAGATGGAAAGACTAGTGATGATATGTATATTTTCGATTTTCAAACTATTCTTGAGGTAACCGCTAATTTTTCTTCCACCAATAAGATAGGAGAGGGTGGTTTTGGACCTGTCTACAAGGAAAAGTTGCCAAGTGGACAAGAAGTAGCCATTAAGAGACTTTCCAAAAGCTCGGGGCAAGGTTTGGTAGAGTTTAAAAATGAAGCCATGCTAATTGTCAAACTCCAACACACCAACTTAGTGAGGCTACTTGGTTTTTGTATTGACAGAGAAGAAAGGATATTAGTTTATGAGTATCTCCCCAACAAAAGCTTGGATTTGTACCTCTTTGGTTCTAATCACAACACTACACTAGAATGGAATATTCGATGCAAGATTATTGAAGGAGTTGCACAAGGACTTGTATATTTACACCAATACTCAAGATTAAAAGTGGTACATAGAGATTTGAAAGCAAGTAACATTTTATTAGACAATCAATTGAATCCAAAAATATCAGATTTTGGTATGGCGAGAATATTTGGATTGATAGAATCTGAAGAACGAACTAACAGGATTGTTGGAACATTTGGTTACATGTCTCCGGAATATGCAATGATGGGTGTGATCTCTACCAAAACAGATGTTTATAGCTTTGGCATCCTTTTACTAGAGATTCTAAGTGGAAAGAAAAATAGTAGTGATTATCCATTTAATCTTGCTTTTAATGCATGGAAACTATGGAATGAAGGTGAAGCTCTGACACTAACGGACACTAACATGAACGGATCATACTCCCCAACCCAAGTGTTAAGATACATTCATATTGGTCTGTTGTGCACACAAGATCAAGCAAGAGACAGACCTACAATGCTTGAGGTTGTTTCTTTTATTTCAAATGAAAATGGTGATTTACCAGAACCTAAGCAACCAGGATTTTGTGTTACTGGACCACCGGAAGAGGAACGCTACACTTGTTCCGTAAGGGAGACAACAAATTCGTTGACATCAGGTAGATAA 2382 0.3866 MAISQTILGFITFTCLMHITKPSNLNTDTLLQGHEFTTSDRLISPTGWYTMSFFQREGSADFYLGIGKSAENSTDQNFWIANRDTPIHDPAPFLTIDEFGNLKIISNRDINSTIMLYSSDAGREVNNNNSTTSTSTTTTFNAILQDTGNLMLREMNQNGSLKRILWQSFDHLSHVLMMGMKLGFDRKTGQNWSITSRRSEETYLSGSFTLALEPTTKQLVIWWKGNILWSSGQWSNGNFANLKSQAYQKDFEFDYYSDENETYVSYLASYIYIAPSGSVYGGASGSSFSCFSDYILSGCSMPSVPRCRDYDSLYRGSWNSYGVMSGKGFKFDESENLTNFDCWMKCLNNCSCEAYSYVNDDETGCEIWSRDSANFVATTNLTGGGRQIYFLVPRKNGNTKIWIISTIVGTLILIILCFTCTKLQKKLKLKAEDRKKRTKLLYEIGGNTAISIAYNEIKERKKDGKTSDDMYIFDFQTILEVTANFSSTNKIGEGGFGPVYKEKLPSGQEVAIKRLSKSSGQGLVEFKNEAMLIVKLQHTNLVRLLGFCIDREERILVYEYLPNKSLDLYLFGSNHNTTLEWNIRCKIIEGVAQGLVYLHQYSRLKVVHRDLKASNILLDNQLNPKISDFGMARIFGLIESEERTNRIVGTFGYMSPEYAMMGVISTKTDVYSFGILLLEILSGKKNSSDYPFNLAFNAWKLWNEGEALTLTDTNMNGSYSPTQVLRYIHIGLLCTQDQARDRPTMLEVVSFISNENGDLPEPKQPGFCVTGPPEEERYTCSVRETTNSLTSGR 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03083 793 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 135 777 - -
Viun1g03083 793 Gene3D Transferase(Phosphotransferase) domain 1 561 759 - -
Viun1g03083 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 450 560 - -
Viun1g03083 793 Pfam Protein tyrosine and serine/threonine kinase 488 751 IPR001245 GO:0004672|GO:0006468
Viun1g03083 793 Pfam D-mannose binding lectin 78 198 IPR001480 -
Viun1g03083 793 ProSiteProfiles PAN/Apple domain profile. 307 394 IPR003609 -
Viun1g03083 793 Gene3D Phosphorylase Kinase; domain 1 448 560 - -
Viun1g03083 793 SMART blect_4 27 172 IPR001480 -
Viun1g03083 793 CDD PAN_AP_plant 327 393 - -
Viun1g03083 793 ProSiteProfiles Bulb-type lectin domain profile. 27 165 IPR001480 -
Viun1g03083 793 SMART ntp_6 316 395 IPR003609 -
Viun1g03083 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 561 760 - -
Viun1g03083 793 ProSiteProfiles Protein kinase domain profile. 485 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03083 793 SUPERFAMILY Protein kinase-like (PK-like) 467 773 IPR011009 -
Viun1g03083 793 Gene3D - 23 170 IPR036426 -
Viun1g03083 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Viun1g03083 793 CDD STKc_IRAK 491 749 - -
Viun1g03083 793 Pfam Domain of unknown function (DUF3403) 754 793 IPR021820 GO:0004674
Viun1g03083 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 235 IPR036426 -
Viun1g03083 793 Pfam PAN-like domain 335 371 IPR003609 -
Viun1g03083 793 SMART serkin_6 485 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03083 793 PIRSF SRK 286 793 IPR024171 GO:0004674
Viun1g03083 793 PIRSF SRK 1 280 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03083 Viun-Chr1 39167866 39172400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03083 453 771 Receptor kinase-like Gene Family AT4G11530 54.630 4.54e-116 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g03083 PK_Tyr_Ser-Thr 9.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03083 - - pvu:PHAVU_001G233000g 1306.97