Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03076 ATGGGTTGCTTCTTTAGTGCTCCTCCAAAGATCAAAGCCGAGAGCCCTCCACGTAATGGTTTGAATTCAAAAGATGGTGGCAAAGAAGAGAATGATCTAAGTGTGACGGTGTTCTCTTCATCTATGCTTCTAACTCCTCAGAATGAGGTTGAGATATTGGAAGCCAGCAATTTGAAGGATTTTGCATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCAGATAGTATGGTAGGTGAAGGTGGGTTTGGTAGTGTGTTCAAAGGGTGGATTGATGAGCAGACACTTGCCCCGACTAAAGCAGGCACAGGAATGGTCATTGCTGTCAAGAGGCTTAACCAAGAAAGCAACCAGGGACACATTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAGCTAATTGGTTATTCATTGGAGGATGATCACCGGATTCTAGTGTATGAATTTGTGGCCAAAGGTAGCTTGGATAATCACTTGTTTAGGAGGGCCTCTTACATTGAACCGCTCTCTTGGAACATCCGTATGAAGATTGCTCTTGATGCTGCCAAAGGCCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATTCAGGGACTTCAAAACTTCTAATATCTTACTTGATTCTAATTATAATGCAAAACTCTCTGATTTTGGATTGGCAAAAAATGGACCAGAAGGTGACAAGAGTCATGTTTCTACAAGAGTGATGGGCACCTTTGGCTACGCTGCTCCTGAGTACATTGCCACAGGTCATCTAACGAAAAGGAGTGACATATACAGTTTTGGGGTTGTTCTTCTGGAACTTATGTCAGGAAAACGTGCATTGGACAACAACAGGCCAAGTGGGGAACATAATCTAGTTGAATGGGCGAAACCACTTCTGATAAACAAACACAAGATCTCCCAAGTGATGGACGCACGTATAGAAGGGCAATACTCAAAGCGAGAAGCAAAGAGAATAGCTCACCTTGCAATTCAATGCCTCTCCACAGATCCAAAACTTAGACCAAACATGGGTGGTGTGGTGAGATCATTGGAACATCTTCAGGATTCCAATGACACACAAATAAATGGTCATAGCTCAAGCAGCGGTGGCACTCCTATTTCTAGCTTGTCTCCTTCTCCTCTTCGTACATAG 1167 0.4319 MGCFFSAPPKIKAESPPRNGLNSKDGGKEENDLSVTVFSSSMLLTPQNEVEILEASNLKDFAFNELRTATRNFRPDSMVGEGGFGSVFKGWIDEQTLAPTKAGTGMVIAVKRLNQESNQGHIEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYIEPLSWNIRMKIALDAAKGLAFLHSDEVDVIFRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYIATGHLTKRSDIYSFGVVLLELMSGKRALDNNRPSGEHNLVEWAKPLLINKHKISQVMDARIEGQYSKREAKRIAHLAIQCLSTDPKLRPNMGGVVRSLEHLQDSNDTQINGHSSSSGGTPISSLSPSPLRT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03076 388 Gene3D Transferase(Phosphotransferase) domain 1 159 374 - -
Viun1g03076 388 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03076 388 SUPERFAMILY Protein kinase-like (PK-like) 50 362 IPR011009 -
Viun1g03076 388 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Viun1g03076 388 PANTHER OS01G0588500 PROTEIN-RELATED 47 359 - -
Viun1g03076 388 Pfam Protein tyrosine and serine/threonine kinase 77 354 IPR001245 GO:0004672|GO:0006468
Viun1g03076 388 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Viun1g03076 388 FunFam Probable serine/threonine-protein kinase PBL8 159 373 - -
Viun1g03076 388 MobiDBLite consensus disorder prediction 358 388 - -
Viun1g03076 388 CDD STKc_IRAK 79 358 - -
Viun1g03076 388 FunFam Serine/threonine-protein kinase BIK1 40 158 - -
Viun1g03076 388 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03076 Viun-Chr1 39114039 39116617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03076 61 367 Glycoside Hydrolase AT3G07070 47.573 1.95e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun1g03076 Pkinase 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03076 - - var:108326804 703.36