Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03070 ATGGAGAGTCCCCATTCGCTCTCTCCCTCCTCTTCCTCCTCTTATTCCTCCGACGGAGTCGCTTTCGACACGGAGGAGCCGAGGACGCCGCTCGCCGTGCGCCGCGCCCTCCACCTCCTCAACTCCGGCGAGCCCCACCTCTGTCTTCAAGCCGCTCGTGACATCCGCCGACTCACCAAGACGTCCCAACGTTGTCGGCGCCAACTGTCTCAGGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACAGGAATCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTGAAGGACGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCGATTGTTAGTTTCCTCAAGTCTCAAAATGTAAATCTGCAGGAGTCTGCAACTGCATCATTGCTCACACTATCTGCCTCTTCGACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTAGAGGTCCTTAGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTGTCTAATTTATCAACCCACCCTACTAATCTCAGCACCATTCTTGAGACAAACCCAATCCCCTTCATAGTTGATCTTCTTAAAACCTGTAAAAAATCATCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCGTTGGTGGATTATGACGAGGGCAGAACTGCCTTGACATCTGAAGAAGGTGGGGTTCTGGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCAATTCTAAGAGAAGGTGTGATTCCAGGACTTCTTGAGCTTACAGTTCAAGGGACACCTAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGCGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACTCTGGAGAATATAGTGTGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTTCAAGTAAGCATGGAACAAAGTCTGAGACATTTACAACAAAGGGCTCTTGTCTGCACCCCAAGTGATCTTCCTATCGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1164 0.4888 MESPHSLSPSSSSSYSSDGVAFDTEEPRTPLAVRRALHLLNSGEPHLCLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRVDSPESQESALLALLNLAVKDEKNKINIVEAGALEPIVSFLKSQNVNLQESATASLLTLSASSTNKPIISACGAIPLLVEVLRDGSPQAKADAVMALSNLSTHPTNLSTILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03070 387 PANTHER U BOX DOMAIN-CONTAINING 19 315 - -
Viun1g03070 387 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g03070 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Viun1g03070 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Viun1g03070 387 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Viun1g03070 387 Gene3D - 21 370 IPR011989 -
Viun1g03070 387 SMART arm_5 184 226 IPR000225 GO:0005515
Viun1g03070 387 SMART arm_5 61 100 IPR000225 GO:0005515
Viun1g03070 387 SMART arm_5 102 142 IPR000225 GO:0005515
Viun1g03070 387 SMART arm_5 143 183 IPR000225 GO:0005515
Viun1g03070 387 SMART arm_5 228 268 IPR000225 GO:0005515
Viun1g03070 387 SUPERFAMILY ARM repeat 33 337 IPR016024 -
Viun1g03070 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Viun1g03070 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 71 113 IPR000225 GO:0005515
Viun1g03070 387 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g03070 387 FunFam U-box domain-containing protein 4 17 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03070 Viun-Chr1 39047857 39051820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03070 50 310 U-box Gene Family AT2G23140 34.981 1.00e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03070 - - gmx:100809684 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03070 1 39047857 39051820 Viun1g03070 1 39047857 39051820 ECH
Viun1g03070 1 39047857 39051820 Viun8g02175 8 31992197 31995685 PCT