Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03069 ATGGCACTGGCCAAAGACCAAAAGATTCCACATGATTCAACCATGAGCGGCAAGGTTCCAAACTGTGTTTTCAGTGAGGCTGTGGAAACTACCTCGGTGACCGTTCATAGAGTCAATGAGTACCGCAAATCTGTCATAGAAGATGAAGATGCTTCACAAACTACCAATGGTCTCAGCAATGATTCAGGTATAACGCATTCTCCTCCTCTATCGGGCTGTGGCAAAGGGTATACTTATAAGGAGAAAAGTTACCAGCTTGATGAAGAAGAATCACTGATTAATTTCAAAGGCTACACCAATCTCTTGCAAGCTGGTGAATCTTTGCTTAGCTTTCAGCACAACAGGCTGGTCCCTAACAATTGTTACTTGAAAGATATTAGTCAGAAAGAGTACTGTGTTTGGGAGAATAATTTGCATCAAGGTCATAACCACTGGAATAAAGACATGCGTCTGGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTGGCTATGGCTCCATGGTCGATAATGCAAAGGAGAAACAATATGGCGAAAGTTCTTCTGGGTGGCTCTACTCAGCACCAACTATTCCTAATGATAGGAACCTCCACAAGTTAGGAGCACGAGAGATGGTGTTGCAAAAGCGTCCTTCTATGGGAGAGAGCATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGCAAAACGCCAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAACGACTGAAGATACTACAAGAACTAGTGCCTAACGGCTCCAAGGTTGATATGGTTACTATGCTGGAGAAAGCAATCAGCTATGTAAAGTTTCTTCAACTTCAAGTGAAAGTGTTAGCAGCAGATGAATTTTGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTAGTTCATCACAAAGAGAGAGAAGTTTAAACTCAAAGTAG 993 0.429 MALAKDQKIPHDSTMSGKVPNCVFSEAVETTSVTVHRVNEYRKSVIEDEDASQTTNGLSNDSGITHSPPLSGCGKGYTYKEKSYQLDEEESLINFKGYTNLLQAGESLLSFQHNRLVPNNCYLKDISQKEYCVWENNLHQGHNHWNKDMRLVQDFNCFQTASGYGSMVDNAKEKQYGESSSGWLYSAPTIPNDRNLHKLGAREMVLQKRPSMGESMKAAKKQCSTESKTPKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLAADEFWPAQGGKPPDISQVKEVIDAISSSQRERSLNSK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03069 330 SMART finulus 242 291 IPR011598 GO:0046983
Viun1g03069 330 Pfam Helix-loop-helix DNA-binding domain 246 286 IPR011598 GO:0046983
Viun1g03069 330 MobiDBLite consensus disorder prediction 46 69 - -
Viun1g03069 330 MobiDBLite consensus disorder prediction 209 249 - -
Viun1g03069 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Viun1g03069 330 FunFam Transcription factor bHLH83 234 293 - -
Viun1g03069 330 CDD bHLH_AtIND_like 237 299 - -
Viun1g03069 330 MobiDBLite consensus disorder prediction 50 67 - -
Viun1g03069 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 297 IPR036638 GO:0046983
Viun1g03069 330 Gene3D - 231 293 IPR036638 GO:0046983
Viun1g03069 330 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 186 294 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03069 Viun-Chr1 39031907 39033874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03069 75 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.788 1.81e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g03069 HLH 7.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03069 - - gmx:100810010 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03069 1 39031907 39033874 Viun1g03069 1 39031907 39033874 ECH
Viun1g03069 1 39031907 39033874 Viun8g02174 8 31982133 31983705 PCT