Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03064 ATGGAGAACTTGCTGGGTCTGCTCAGAATTCATGTTGAAAGAGGTGTCAATCTTGCAATCAGGGATGTGGTGAGCAGTGATCCTTATGTTGTCATCAAACTGGGCAAGCAGAAGCTGAAGACTCGGGTGGTCAAGAAGAATTTAAATCCTGAATGGAATGATGACTTGACCCTGTCTATTTCAGATCCTCATGCTCCAATCCATCTTCATGTGTATGACAAGGACACATTCAGCTTAGATGACAAAATGGGGGATGCTGATTTTTCCATTGGTCCATTCACTGAAGCAGTGAAGATGCGCTTGACAGGTCTCCCCAACAATACCATAGTTACAAAAGTGTTACCTAGCAGACAAAACTGTTTGGCTGAAGAGAGTCACATTGTGTGGAAGGATGGCAAAGTTGTGCAAAACCTGGTTCTTAGACTAAGAAATGTAGAGTGTGGGGAGGTGGAACTCCAGTTGCATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 498 0.4398 MENLLGLLRIHVERGVNLAIRDVVSSDPYVVIKLGKQKLKTRVVKKNLNPEWNDDLTLSISDPHAPIHLHVYDKDTFSLDDKMGDADFSIGPFTEAVKMRLTGLPNNTIVTKVLPSRQNCLAEESHIVWKDGKVVQNLVLRLRNVECGEVELQLHWIDIPGSRHL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03064 165 CDD C2_ArfGAP 5 148 - -
Viun1g03064 165 SMART C2_3c 7 102 IPR000008 -
Viun1g03064 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Viun1g03064 165 Pfam C2 domain 6 92 IPR000008 -
Viun1g03064 165 Gene3D C2 domain 3 164 IPR035892 -
Viun1g03064 165 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Viun1g03064 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 151 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03064 Viun-Chr1 38987634 38990038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03064 38 165 C2H2 Transcription Factor Family AT1G70790 56.923 2.30e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03064 - - pvu:PHAVU_001G230800g 311.997