Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03063 ATGTTGTCATCAAACTGGGCAAGCAGAACTAGATTCTGCACTCTGGCACTCCAACTCAATAACTTAAATATGGATATGCAGAAAACTTCATGTAAGCTGAAGACTCGGGTGGTCAAGAAGAATTTAAATCCTGAATGGAATGATGACTTGACCCTGTCTATTTCAGATCCTCATGCTCCAATCCATCTTCATGTGTATGACAAGGACACATTCAGCTTAGATGACAAAATGGGGGATGCTGATTTTTCCATTGGTCCATTCACTGAAGCAGTGAAGATGCGCTTGACAGGTCTCCCCAACAATACCATAGTTACAAAAGTGTTACCTAGCAGACAAAACTGTTTGGCTGAAGAGAGTCACATTGTGTGGAAGGATGGCAAAGTTGTGCAAAACCTGGTTCTTAGACTAAGAAATGTAGAGTGTGGGGAGGTGGAACTCCAGTTGCATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG 480 0.425 MLSSNWASRTRFCTLALQLNNLNMDMQKTSCKLKTRVVKKNLNPEWNDDLTLSISDPHAPIHLHVYDKDTFSLDDKMGDADFSIGPFTEAVKMRLTGLPNNTIVTKVLPSRQNCLAEESHIVWKDGKVVQNLVLRLRNVECGEVELQLHWIDIPGSRHL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03063 159 Gene3D C2 domain 12 158 IPR035892 -
Viun1g03063 159 ProSiteProfiles C2 domain profile. 1 100 IPR000008 -
Viun1g03063 159 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 29 145 IPR035892 -
Viun1g03063 159 SMART C2_3c 11 96 IPR000008 -
Viun1g03063 159 Pfam C2 domain 28 86 IPR000008 -
Viun1g03063 159 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 31 157 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03063 Viun-Chr1 38987617 38989973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03063 32 159 C2H2 Transcription Factor Family AT1G70790 56.923 4.56e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03063 - - pvu:PHAVU_001G230800g 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03063 1 38987617 38989973 Viun4g00383 4 2512656 2515052 ECH
Viun1g03063 1 38987617 38989973 Viun1g03063 1 38987617 38989973 ECH