Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03050 ATGGCAACTGGAGACTTCATTAATAAATCCCTTTCACTTCCTCCATACCCCGAGATGATTTTGGAGGCAGTTGAGGCACTGAATGAAGGGAATGGTTCGAATAAAACATCAATTTCCAAGTACATAGAATCTAGGTACGGTGTATTGCCTCCGGGCCACAAGGTACTGCTCAATGTACACCTTGCAAAAATGAGAGACAGTGGGGTGCTTGACTTTTGGAAGAATAACTACACCAAGCGTGACCCAAACGCGCCGCCGCGGCGTGGCCGTGGCAGGCCACCTAAGCCCAAGGAGCTTCTGCCTCCGGGCATTGTCCAGTCACCGCCCAGGCCCAGGGGCCGCCCCCCAAAGGGCCCAAGTGACATGCAAAGGCCACCCAAAGCCACGGCTGGGAGTGGCAGGCCCAGAGGCCGGCCTAGGAAGATGGCCCGGCCCGCCGGAGGATTTGGCGAAGCATCGGGTTCCTCGTTGAAGCCCAGCGGGAAGCCCAGGGGAAGGCCTCCGAAAGTGAGGCCAGAAGGGTTGCATGGATAG 534 0.5712 MATGDFINKSLSLPPYPEMILEAVEALNEGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDSGVLDFWKNNYTKRDPNAPPRRGRGRPPKPKELLPPGIVQSPPRPRGRPPKGPSDMQRPPKATAGSGRPRGRPRKMARPAGGFGEASGSSLKPSGKPRGRPPKVRPEGLHG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03050 177 FunFam HMG-Y-related protein A 8 90 - -
Viun1g03050 177 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun1g03050 177 MobiDBLite consensus disorder prediction 81 95 - -
Viun1g03050 177 PANTHER HISTONE H1 12 172 - -
Viun1g03050 177 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Viun1g03050 177 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Viun1g03050 177 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Viun1g03050 177 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun1g03050 177 PRINTS High mobility group protein (HMGY) signature 109 120 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Viun1g03050 177 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Viun1g03050 177 PRINTS High mobility group protein (HMGY) signature 122 141 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Viun1g03050 177 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Viun1g03050 177 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Viun1g03050 177 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Viun1g03050 177 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Viun1g03050 177 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Viun1g03050 177 Gene3D - 9 84 IPR036388 -
Viun1g03050 177 MobiDBLite consensus disorder prediction 96 122 - -
Viun1g03050 177 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun1g03050 177 MobiDBLite consensus disorder prediction 75 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03050 Viun-Chr1 38925443 38926520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03050 19 86 Single Myb Histone (SMH) Gene Family AT1G49950 41.176 3.95e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03050 - - gmx:100803968 245.358