Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03049 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGAAGTAACAGAGGAGGTAGAGGTAGAGGAGGACGTGGCAGGGTCCAGTCTGGTCGTGGGCCTAGCGGTGCTCTTAATGGAGGAAGAATGGCCGGTGCTGTTAATAGTAGAAGAATTACTGGTGCCGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGACCATCATCATATGCTATTGCCAAGTCTATTCGCAGAACTAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACTAAGTTATATGTTTCCAACTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTATGCTGTTCATTATGACAAAAATGGACACCCAAGTGGTTCGGCCGAAGTTGTGTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATGCAGAATTGCCCGTAAGTGCTCGGGTGAATGTTACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGACCAGCTGGAGGTCGTGCTATTCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAGTGGCAATGGTAGGGGTCGAGGTGCTGGAGGTCGTGGTCGTGGCAATGGTCGCGGTGGAGGGCGAGGCCGTGGTAGAAAAGACGGTGTTGAGAAGTCAGCAGAAGAACTTGACAAAGAACTGGAGACCTATCACGCTGAGGCCATGAACATCTCTTGA 891 0.4781 MASSLDMSLDDRIKNRSNRGGRGRGGRGRVQSGRGPSGALNGGRMAGAVNSRRITGAGNGGRTSGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPVSARVNVTGVNGRRKRTVVMTPRGGPAGGRAIPNRGAGWGRRGGTRSGNGRGRGAGGRGRGNGRGGGRGRGRKDGVEKSAEELDKELETYHAEAMNIS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03049 296 SUPERFAMILY RNA-binding domain, RBD 110 190 IPR035979 GO:0003676
Viun1g03049 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Viun1g03049 296 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 293 - -
Viun1g03049 296 Coils Coil 271 291 - -
Viun1g03049 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Viun1g03049 296 Pfam C-terminal duplication domain of Friend of PRMT1 238 290 IPR025715 -
Viun1g03049 296 SMART rrm1_1 117 189 IPR000504 GO:0003723
Viun1g03049 296 SMART FoP_duplication_2 220 296 IPR025715 -
Viun1g03049 296 MobiDBLite consensus disorder prediction 265 289 - -
Viun1g03049 296 Gene3D - 111 192 IPR012677 -
Viun1g03049 296 MobiDBLite consensus disorder prediction 216 296 - -
Viun1g03049 296 CDD RRM_THOC4 116 190 - -
Viun1g03049 296 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03049 Viun-Chr1 38915837 38921889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03049 115 190 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.63e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03049 K12881 - gmx:100820344 440.654