Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03046 ATGGGAAGACAACCTTGTTGTGACAAAGTGGGGTTGAAGAAGGGTCCATGGACTGCAGAGGAGGATAAGAAACTCATCAACTTCATCCTCACCAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAACTTGCAGGGCTGTTAAGGTGTGGTAAAAGTTGCAGGCTGAGATGGACAAATTACCTAAGGCCAGACCTGAAGAGAGGCCTTTTATCAGAATATGAAGAGAAAATGGTGATTGATCTCCATGCTCAACTTGGCAATAGGTGGTCTAAGATTGCGTCTCATCTCCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACTCATATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACCCACAAGTCACTTTCCATTGCAACTGAGCAAACCCAAGCCCAACCAGATGAACAACCCCATCAGCCATTGCAAGAACAACAACATCAGCAACAAGGTCTCCAAGTTGAGGAAGACCCAAAATTTGAGGCTGAAAATGGGCAAAACAAGGAGGCGGAGAAGGCAGAGACTTCGTTTGATTTATCAAGCATCACCGAAGAAGCTAAGGAGGAAGACCAAATCATGACACCACTTTTTGACTCAATAATGAATGAGTTCTGCACTGATGAAGTTCCCATTATAGAAGCCAGTGAGATATTAGTTCCATCTGGTGCTACTTCAACTTCACCAACCACAACATCATCTTCAACATCATCGTCTTGTTATTCAAATTCCCCCAACTTGTTTGAAGACCTGCTGCTCCCAGATTTTGACTGGTCCGATGATTACAATGATACTAAGATTGACAATAACAACAGCAGTGTGGCCTTGTGGGATGATGACTTGATTAGAAGTTGGAATCTGCTTCTTAATGATGATTGCGATGGTGACAGAAAGCAAGTGTTTGACACTTCTGTCAATCAGTACCCGAGAGTGATCATGGATTCAGAATCTTGGGCATATGGCTTGTTTTGA 987 0.4286 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSIATEQTQAQPDEQPHQPLQEQQHQQQGLQVEEDPKFEAENGQNKEAEKAETSFDLSSITEEAKEEDQIMTPLFDSIMNEFCTDEVPIIEASEILVPSGATSTSPTTTSSSTSSSCYSNSPNLFEDLLLPDFDWSDDYNDTKIDNNNSSVALWDDDLIRSWNLLLNDDCDGDRKQVFDTSVNQYPRVIMDSESWAYGLF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03046 328 SMART sant 66 114 IPR001005 -
Viun1g03046 328 SMART sant 13 63 IPR001005 -
Viun1g03046 328 FunFam MYB transcription factor 11 67 - -
Viun1g03046 328 MobiDBLite consensus disorder prediction 226 247 - -
Viun1g03046 328 CDD SANT 16 61 IPR001005 -
Viun1g03046 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun1g03046 328 FunFam Myb transcription factor 71 133 - -
Viun1g03046 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun1g03046 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun1g03046 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun1g03046 328 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Viun1g03046 328 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Viun1g03046 328 Gene3D - 70 159 - -
Viun1g03046 328 MobiDBLite consensus disorder prediction 134 159 - -
Viun1g03046 328 MobiDBLite consensus disorder prediction 134 186 - -
Viun1g03046 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun1g03046 328 MobiDBLite consensus disorder prediction 160 181 - -
Viun1g03046 328 CDD SANT 74 112 IPR001005 -
Viun1g03046 328 Gene3D - 11 67 - -
Viun1g03046 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03046 Viun-Chr1 38886022 38888011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03046 1 297 MYB Transcription Factor Family AT1G66230 55.882 2.65e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g03046 Myb_DNA-binding 9.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03046 K09422 - gmx:100803624 512.686