Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03017 ATGCCCTTGGAGGGGATTTTCATTGAACCTACTTCAACTTCTACACCTGATCTTTCCCTTCACATAAGTCCACCCAGCACTTCATCTTCTTCTTCTTTGATTTGCAACAACGGCACATCTGGTGGTGGTGCCACCAATTATGAGGCTCGCAATTCAACCAGCACAAATTTCCCTTCTCAAGCTCACACTGAGCTTTCTTTGGGAAGGAATTTCAGTGGTGGAGGAAGAGGGGGTATTGAAGAACCACCACCACACAACACCAACACCAACAACAACAACACCAACACCAACACCGGCATCAACCCTTATTATCAGACCCAACAGCCTCATTTTCATCATCTTCACCACCATTCTAACACCGGGAATGCTTCAAAAGCAGCAACGGCGACAAGCACCACAAGTTCCTCCAATCACTTGAGTCACATAAATTATGGGGTTTCTTTGCTTGATGTGTCATCAGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATTCAGGAGACAAGGATCATCACGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCTCTTTGTCCTCTTCTTGTTCTCCTCTGTGTTCTTCTCCTTCTTTTACTTCTTCTCCTGCACCCTACTTTCCCGCGCCAGGTACACCGGATCCCATGTCCTATTTGAGCTCAGGTGGGACCACCGTGGCGGCGGCCGCGGCTTATAGGGCTGCCACGGCCACGAGGTTTAATGGAATTTCTGGGGAGGCCTTCAAATCTCATCATCCATTGCACCACCATCACTCATCATCACACTACGGGGTTGGACTTGGAGGCTCTCACGAGGCCTCTTCGGGGTTGATGAGATCAAGGTTTTTGCCCAAGTTACCGACGAAGAGAAGCATGAGAGCACCGAGAATGCGGTGGACAAGCACACTACACGCTCGATTCGTCCATGCTGTGGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTAGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATAGAACTGTGAAGACCACTGACAAGCCTGCAGCTTCTTCAGGCCTTTCAGATGGATCAGGAGAAGATGACATGTCTCCAATGGGAAGCAGCGGTGGTATGCGTCAATTTTCAGACCAAAGAAGCCTTTCGGATCGACCGGTGCAACAAGATATGGATTACTCTTCGGCCAATACTCTATGGAGTAACTCTTCAAGCAATAGAGAATCATGGCCACAAAACAGTTCTAACGACATAAATGGTTTCCGACCACCAATCTTCCAGTCACAACAAATATCCGGAGGACATCAAATTCAGGATTGTGATTCAAGCCAACTGAAGAACAACTTGTCAGGATCAGGAAATTTAGAATGCAAGAACCCAAGCTTGGAGTTCACATTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1491 0.4728 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNGTSGGGATNYEARNSTSTNFPSQAHTELSLGRNFSGGGRGGIEEPPPHNTNTNNNNTNTNTGINPYYQTQQPHFHHLHHHSNTGNASKAATATSTTSSSNHLSHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPMEHSGDKDHHAKMCLYHHMPTYPSLSSSCSPLCSSPSFTSSPAPYFPAPGTPDPMSYLSSGGTTVAAAAAYRAATATRFNGISGEAFKSHHPLHHHHSSSHYGVGLGGSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRSLSDRPVQQDMDYSSANTLWSNSSSNRESWPQNSSNDINGFRPPIFQSQQISGGHQIQDCDSSQLKNNLSGSGNLECKNPSLEFTLGRPDWNGKGQA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03017 496 MobiDBLite consensus disorder prediction 363 473 - -
Viun1g03017 496 MobiDBLite consensus disorder prediction 83 108 - -
Viun1g03017 496 MobiDBLite consensus disorder prediction 389 473 - -
Viun1g03017 496 Gene3D - 307 364 - -
Viun1g03017 496 MobiDBLite consensus disorder prediction 1 39 - -
Viun1g03017 496 MobiDBLite consensus disorder prediction 65 137 - -
Viun1g03017 496 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 493 IPR044847 GO:0000976|GO:0006355|GO:0010158
Viun1g03017 496 SUPERFAMILY Homeodomain-like 305 361 IPR009057 -
Viun1g03017 496 MobiDBLite consensus disorder prediction 264 283 - -
Viun1g03017 496 FunFam Myb family transcription factor 306 364 - -
Viun1g03017 496 MobiDBLite consensus disorder prediction 120 137 - -
Viun1g03017 496 NCBIfam myb-like DNA-binding domain, SHAQKYF class 308 361 IPR006447 GO:0003677
Viun1g03017 496 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03017 Viun-Chr1 38713719 38719120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03017 157 493 G2-like Transcription Factor Family AT5G16560 46.389 5.53e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g03017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03017 - - ccaj:109796302 678.707