Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03006 ATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCGCGGTCGTTTTCAATGAAGAAAGGAAGAAAGAATGAGAAATGCGGAGGGAGGGAAGCTGCCGAAGCAATGGCGAAGGAGGCTAAGAAGAATGAGATGATGCTGTGTAGCTCTGGCATAGTTCATGTCGATGGTTCAAACAACTTTGCCTCCGTATTCTCCAGAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGGTGCCAAGAGGACATGATCTTCTGTGGGATTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCATCGTCTTTGCTATGCAACTGGCAGGAGACGCTAGCCCAAACTTCAGTTGATCCTGGTGTTGATGTAGACGAAGGAAAAAGACAACTTTACCGATTCAACGTATGGAAGCACTCTTACTTGAAGACATGTGCGGCCATTGATCAAGAACTGAAGCAGCACCGCAAGATAGACTCGTTTTACAGCGGAACAACTGCCCTATCAATTGTTAGACAGGGTGAACTCATTGTGATAGCAAATGTTGGAGATTCTCGTGCTGTGTTGGCTACAAAATCAGATGAAGGAAGTTTGGTGGCGGTTCAACTAACAGTTGATTTCAAGCCCAATTTACCCCAAGAAGAAGAGAGAATAACTCAGTGCCAGGGGCGTGTGTTCTGCCTAGAGGACGAGCCAGGGGTGCATAGGGTGTGGTTGCCGGATGCAGAGTCTCCAGGGCTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGCCTAATTTCTGTGCCTGAGGTAACACACAGAAGCATAAGTAGCAGAGACCAGTTTGTTGTGCTAGCCACTGATGGGGTTTGGGATGTAATATCTAACAAAGAAGCAGTGGAAATTGTATCTTCAACAGCAGATAAAGCTAAGGCTGCTAAAAGGTTGGTAGAGTGTGCGGAACATGCATGGAAACGCAAGAGACGGGGCATTGCCGTGGATGATATTTCAGCCATTTGTCTTTTCTTTCACTCTTCCCTTTGA 1074 0.4693 MGHFSSMFNGLARSFSMKKGRKNEKCGGREAAEAMAKEAKKNEMMLCSSGIVHVDGSNNFASVFSRRGQKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPSSLLCNWQETLAQTSVDPGVDVDEGKRQLYRFNVWKHSYLKTCAAIDQELKQHRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATKSDEGSLVAVQLTVDFKPNLPQEEERITQCQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRSISSRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKAAKRLVECAEHAWKRKRRGIAVDDISAICLFFHSSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03006 357 CDD PP2Cc 59 353 IPR001932 -
Viun1g03006 357 SUPERFAMILY PP2C-like 56 354 IPR036457 -
Viun1g03006 357 PANTHER PROTEIN PHOSPHATASE 38 351 IPR015655 GO:0004722|GO:0006470
Viun1g03006 357 SMART PP2C_4 51 351 IPR001932 -
Viun1g03006 357 Gene3D - 52 355 IPR036457 -
Viun1g03006 357 Pfam Protein phosphatase 2C 80 329 IPR001932 -
Viun1g03006 357 FunFam Probable protein phosphatase 2C 34 51 355 - -
Viun1g03006 357 ProSiteProfiles PPM-type phosphatase domain profile. 60 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03006 Viun-Chr1 38615112 38618346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03006 1 354 PP2C-type Phosphatase Gene Family AT3G05640 74.157 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03006 - - vra:106757085 696.041